Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19525

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19515 and BWI76_RS19520 are separated by 97 nucleotidesBWI76_RS19520 and BWI76_RS19525 are separated by 138 nucleotidesBWI76_RS19525 and BWI76_RS19530 are separated by 174 nucleotidesBWI76_RS19530 and BWI76_RS19535 are separated by 155 nucleotides BWI76_RS19515: BWI76_RS19515 - D-lactate dehydrogenase (cytochrome c-553) (EC 1.1.2.5) (from data), at 4,078,765 to 4,080,507 _RS19515 BWI76_RS19520: BWI76_RS19520 - acetyltransferase GCN5, at 4,080,605 to 4,081,159 _RS19520 BWI76_RS19525: BWI76_RS19525 - D-alanyl-D-alanine endopeptidase, at 4,081,298 to 4,082,245 _RS19525 BWI76_RS19530: BWI76_RS19530 - YIP1 family protein, at 4,082,420 to 4,083,007 _RS19530 BWI76_RS19535: BWI76_RS19535 - putative integral membrane protein, at 4,083,163 to 4,083,732 _RS19535 Position (kb) 4081 4082 4083Strain fitness (log2 ratio) -3 -2 -1 0 1at 4080.333 kb on + strandat 4080.371 kb on - strandat 4080.419 kb on + strandat 4080.523 kb on + strandat 4080.542 kb on + strandat 4080.550 kb on - strandat 4080.699 kb on - strand, within BWI76_RS19520at 4080.728 kb on - strand, within BWI76_RS19520at 4080.884 kb on - strand, within BWI76_RS19520at 4081.612 kb on + strand, within BWI76_RS19525at 4082.036 kb on - strand, within BWI76_RS19525at 4082.209 kb on + strandat 4082.217 kb on - strandat 4082.217 kb on - strandat 4082.307 kb on - strandat 4082.309 kb on - strandat 4082.309 kb on - strandat 4082.426 kb on + strandat 4082.455 kb on - strandat 4082.510 kb on + strand, within BWI76_RS19530at 4082.580 kb on + strand, within BWI76_RS19530at 4082.580 kb on + strand, within BWI76_RS19530at 4082.801 kb on - strand, within BWI76_RS19530at 4082.925 kb on - strand, within BWI76_RS19530at 4083.031 kb on + strandat 4083.039 kb on - strandat 4083.120 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
4,080,333 + -0.8
4,080,371 - +1.1
4,080,419 + +0.6
4,080,523 + +0.1
4,080,542 + -2.1
4,080,550 - -0.8
4,080,699 - BWI76_RS19520 0.17 +0.0
4,080,728 - BWI76_RS19520 0.22 +1.0
4,080,884 - BWI76_RS19520 0.50 -0.1
4,081,612 + BWI76_RS19525 0.33 +0.3
4,082,036 - BWI76_RS19525 0.78 -1.8
4,082,209 + -2.3
4,082,217 - +1.2
4,082,217 - -3.4
4,082,307 - -0.1
4,082,309 - -0.7
4,082,309 - +0.2
4,082,426 + -0.3
4,082,455 - +0.3
4,082,510 + BWI76_RS19530 0.15 -0.6
4,082,580 + BWI76_RS19530 0.27 +0.6
4,082,580 + BWI76_RS19530 0.27 -0.2
4,082,801 - BWI76_RS19530 0.65 +0.6
4,082,925 - BWI76_RS19530 0.86 -1.9
4,083,031 + +0.7
4,083,039 - +0.8
4,083,120 + -0.0

Or see this region's nucleotide sequence