Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18790

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18785 and BWI76_RS18790 are separated by 104 nucleotidesBWI76_RS18790 and BWI76_RS18795 are separated by 42 nucleotidesBWI76_RS18795 and BWI76_RS18800 are separated by 1 nucleotidesBWI76_RS18800 and BWI76_RS18805 are separated by 7 nucleotides BWI76_RS18785: BWI76_RS18785 - exodeoxyribonuclease I, at 3,893,282 to 3,894,706 _RS18785 BWI76_RS18790: BWI76_RS18790 - elongation factor G, at 3,894,811 to 3,896,913 _RS18790 BWI76_RS18795: BWI76_RS18795 - hypothetical protein, at 3,896,956 to 3,897,150 _RS18795 BWI76_RS18800: BWI76_RS18800 - transcriptional regulator, at 3,897,152 to 3,897,463 _RS18800 BWI76_RS18805: BWI76_RS18805 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 3,897,471 to 3,900,986 _RS18805 Position (kb) 3894 3895 3896 3897Strain fitness (log2 ratio) -2 -1 0 1at 3894.055 kb on + strand, within BWI76_RS18785at 3894.063 kb on - strand, within BWI76_RS18785at 3894.553 kb on + strand, within BWI76_RS18785at 3894.667 kb on + strandat 3894.667 kb on + strandat 3894.796 kb on - strandat 3894.911 kb on + strandat 3895.005 kb on - strandat 3895.166 kb on - strand, within BWI76_RS18790at 3895.274 kb on + strand, within BWI76_RS18790at 3895.358 kb on - strand, within BWI76_RS18790at 3895.365 kb on + strand, within BWI76_RS18790at 3895.572 kb on - strand, within BWI76_RS18790at 3895.739 kb on - strandat 3895.911 kb on + strand, within BWI76_RS18790at 3895.939 kb on - strand, within BWI76_RS18790at 3896.002 kb on + strand, within BWI76_RS18790at 3896.273 kb on + strand, within BWI76_RS18790at 3896.311 kb on - strand, within BWI76_RS18790at 3896.380 kb on + strand, within BWI76_RS18790at 3896.648 kb on - strand, within BWI76_RS18790at 3896.658 kb on + strand, within BWI76_RS18790at 3897.135 kb on - strandat 3897.268 kb on + strand, within BWI76_RS18800

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,894,055 + BWI76_RS18785 0.54 +0.1
3,894,063 - BWI76_RS18785 0.55 +0.1
3,894,553 + BWI76_RS18785 0.89 +0.0
3,894,667 + +0.8
3,894,667 + +0.4
3,894,796 - +1.6
3,894,911 + +1.4
3,895,005 - -0.1
3,895,166 - BWI76_RS18790 0.17 -1.1
3,895,274 + BWI76_RS18790 0.22 +0.7
3,895,358 - BWI76_RS18790 0.26 +0.6
3,895,365 + BWI76_RS18790 0.26 -0.4
3,895,572 - BWI76_RS18790 0.36 -0.5
3,895,739 - -1.1
3,895,911 + BWI76_RS18790 0.52 -1.8
3,895,939 - BWI76_RS18790 0.54 -1.1
3,896,002 + BWI76_RS18790 0.57 +0.7
3,896,273 + BWI76_RS18790 0.70 +0.7
3,896,311 - BWI76_RS18790 0.71 +0.4
3,896,380 + BWI76_RS18790 0.75 +0.3
3,896,648 - BWI76_RS18790 0.87 -1.0
3,896,658 + BWI76_RS18790 0.88 -1.1
3,897,135 - -0.2
3,897,268 + BWI76_RS18800 0.37 -0.1

Or see this region's nucleotide sequence