Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17830

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17825 and BWI76_RS17830 are separated by 7 nucleotidesBWI76_RS17830 and BWI76_RS17835 are separated by 10 nucleotidesBWI76_RS17835 and BWI76_RS17840 are separated by 9 nucleotides BWI76_RS17825: BWI76_RS17825 - alginate lyase, at 3,704,966 to 3,706,105 _RS17825 BWI76_RS17830: BWI76_RS17830 - ABC transporter ATP-binding protein, at 3,706,113 to 3,707,207 _RS17830 BWI76_RS17835: BWI76_RS17835 - sugar ABC transporter permease, at 3,707,218 to 3,708,057 _RS17835 BWI76_RS17840: BWI76_RS17840 - sugar ABC transporter permease, at 3,708,067 to 3,709,008 _RS17840 Position (kb) 3706 3707 3708Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3705.136 kb on - strand, within BWI76_RS17825at 3705.520 kb on + strand, within BWI76_RS17825at 3705.763 kb on - strand, within BWI76_RS17825at 3705.780 kb on - strand, within BWI76_RS17825at 3705.861 kb on + strand, within BWI76_RS17825at 3705.939 kb on - strand, within BWI76_RS17825at 3706.011 kb on + strandat 3706.035 kb on + strandat 3706.272 kb on - strand, within BWI76_RS17830at 3706.345 kb on + strand, within BWI76_RS17830at 3706.353 kb on - strand, within BWI76_RS17830at 3706.355 kb on + strand, within BWI76_RS17830at 3706.377 kb on - strand, within BWI76_RS17830at 3706.647 kb on - strand, within BWI76_RS17830at 3706.665 kb on + strand, within BWI76_RS17830at 3706.885 kb on + strand, within BWI76_RS17830at 3706.913 kb on - strand, within BWI76_RS17830at 3706.996 kb on - strand, within BWI76_RS17830at 3707.192 kb on + strandat 3707.397 kb on - strand, within BWI76_RS17835at 3707.530 kb on - strand, within BWI76_RS17835at 3707.588 kb on - strand, within BWI76_RS17835at 3707.643 kb on - strand, within BWI76_RS17835at 3707.704 kb on - strand, within BWI76_RS17835at 3707.866 kb on + strand, within BWI76_RS17835at 3707.961 kb on - strand, within BWI76_RS17835at 3707.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,705,136 - BWI76_RS17825 0.15 +0.5
3,705,520 + BWI76_RS17825 0.49 -2.1
3,705,763 - BWI76_RS17825 0.70 +0.7
3,705,780 - BWI76_RS17825 0.71 +0.5
3,705,861 + BWI76_RS17825 0.79 +0.6
3,705,939 - BWI76_RS17825 0.85 -0.3
3,706,011 + -2.0
3,706,035 + -3.3
3,706,272 - BWI76_RS17830 0.15 +1.3
3,706,345 + BWI76_RS17830 0.21 -1.6
3,706,353 - BWI76_RS17830 0.22 -0.2
3,706,355 + BWI76_RS17830 0.22 -2.4
3,706,377 - BWI76_RS17830 0.24 +0.1
3,706,647 - BWI76_RS17830 0.49 +0.0
3,706,665 + BWI76_RS17830 0.50 -0.6
3,706,885 + BWI76_RS17830 0.71 -0.3
3,706,913 - BWI76_RS17830 0.73 +0.3
3,706,996 - BWI76_RS17830 0.81 -0.3
3,707,192 + -3.0
3,707,397 - BWI76_RS17835 0.21 +0.0
3,707,530 - BWI76_RS17835 0.37 +0.6
3,707,588 - BWI76_RS17835 0.44 -1.8
3,707,643 - BWI76_RS17835 0.51 -0.2
3,707,704 - BWI76_RS17835 0.58 -1.4
3,707,866 + BWI76_RS17835 0.77 +1.0
3,707,961 - BWI76_RS17835 0.88 +2.2
3,707,997 - -4.6

Or see this region's nucleotide sequence