Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17825 and BWI76_RS17830 are separated by 7 nucleotides BWI76_RS17830 and BWI76_RS17835 are separated by 10 nucleotides BWI76_RS17835 and BWI76_RS17840 are separated by 9 nucleotides
BWI76_RS17825: BWI76_RS17825 - alginate lyase, at 3,704,966 to 3,706,105
_RS17825
BWI76_RS17830: BWI76_RS17830 - ABC transporter ATP-binding protein, at 3,706,113 to 3,707,207
_RS17830
BWI76_RS17835: BWI76_RS17835 - sugar ABC transporter permease, at 3,707,218 to 3,708,057
_RS17835
BWI76_RS17840: BWI76_RS17840 - sugar ABC transporter permease, at 3,708,067 to 3,709,008
_RS17840
Position (kb)
3706
3707
3708 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3705.136 kb on - strand, within BWI76_RS17825 at 3705.520 kb on + strand, within BWI76_RS17825 at 3705.763 kb on - strand, within BWI76_RS17825 at 3705.780 kb on - strand, within BWI76_RS17825 at 3705.861 kb on + strand, within BWI76_RS17825 at 3705.939 kb on - strand, within BWI76_RS17825 at 3706.011 kb on + strand at 3706.035 kb on + strand at 3706.272 kb on - strand, within BWI76_RS17830 at 3706.345 kb on + strand, within BWI76_RS17830 at 3706.353 kb on - strand, within BWI76_RS17830 at 3706.355 kb on + strand, within BWI76_RS17830 at 3706.377 kb on - strand, within BWI76_RS17830 at 3706.647 kb on - strand, within BWI76_RS17830 at 3706.665 kb on + strand, within BWI76_RS17830 at 3706.885 kb on + strand, within BWI76_RS17830 at 3706.913 kb on - strand, within BWI76_RS17830 at 3706.996 kb on - strand, within BWI76_RS17830 at 3707.192 kb on + strand at 3707.397 kb on - strand, within BWI76_RS17835 at 3707.530 kb on - strand, within BWI76_RS17835 at 3707.588 kb on - strand, within BWI76_RS17835 at 3707.643 kb on - strand, within BWI76_RS17835 at 3707.704 kb on - strand, within BWI76_RS17835 at 3707.866 kb on + strand, within BWI76_RS17835 at 3707.961 kb on - strand, within BWI76_RS17835 at 3707.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,705,136 - BWI76_RS17825 0.15 +0.5 3,705,520 + BWI76_RS17825 0.49 -2.1 3,705,763 - BWI76_RS17825 0.70 +0.7 3,705,780 - BWI76_RS17825 0.71 +0.5 3,705,861 + BWI76_RS17825 0.79 +0.6 3,705,939 - BWI76_RS17825 0.85 -0.3 3,706,011 + -2.0 3,706,035 + -3.3 3,706,272 - BWI76_RS17830 0.15 +1.3 3,706,345 + BWI76_RS17830 0.21 -1.6 3,706,353 - BWI76_RS17830 0.22 -0.2 3,706,355 + BWI76_RS17830 0.22 -2.4 3,706,377 - BWI76_RS17830 0.24 +0.1 3,706,647 - BWI76_RS17830 0.49 +0.0 3,706,665 + BWI76_RS17830 0.50 -0.6 3,706,885 + BWI76_RS17830 0.71 -0.3 3,706,913 - BWI76_RS17830 0.73 +0.3 3,706,996 - BWI76_RS17830 0.81 -0.3 3,707,192 + -3.0 3,707,397 - BWI76_RS17835 0.21 +0.0 3,707,530 - BWI76_RS17835 0.37 +0.6 3,707,588 - BWI76_RS17835 0.44 -1.8 3,707,643 - BWI76_RS17835 0.51 -0.2 3,707,704 - BWI76_RS17835 0.58 -1.4 3,707,866 + BWI76_RS17835 0.77 +1.0 3,707,961 - BWI76_RS17835 0.88 +2.2 3,707,997 - -4.6
Or see this region's nucleotide sequence