Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10720 and BWI76_RS10725 are separated by 516 nucleotides BWI76_RS10725 and BWI76_RS10730 are separated by 139 nucleotides BWI76_RS10730 and BWI76_RS10735 are separated by 147 nucleotides BWI76_RS10735 and BWI76_RS10740 are separated by 19 nucleotides
BWI76_RS10720: BWI76_RS10720 - putrescine importer, at 2,265,191 to 2,266,582
_RS10720
BWI76_RS10725: BWI76_RS10725 - hypothetical protein, at 2,267,099 to 2,267,323
_RS10725
BWI76_RS10730: BWI76_RS10730 - bifunctional glucose-1-phosphatase/inositol phosphatase, at 2,267,463 to 2,268,710
_RS10730
BWI76_RS10735: BWI76_RS10735 - hypothetical protein, at 2,268,858 to 2,269,085
_RS10735
BWI76_RS10740: BWI76_RS10740 - NAD(P)H:quinone oxidoreductase, at 2,269,105 to 2,269,701
_RS10740
Position (kb)
2267
2268
2269 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2266.492 kb on - strand at 2266.506 kb on - strand at 2266.551 kb on - strand at 2266.567 kb on + strand at 2266.567 kb on + strand at 2266.570 kb on - strand at 2266.598 kb on + strand at 2266.739 kb on - strand at 2266.776 kb on + strand at 2266.776 kb on + strand at 2267.058 kb on + strand at 2267.064 kb on + strand at 2267.064 kb on + strand at 2267.066 kb on - strand at 2267.148 kb on - strand, within BWI76_RS10725 at 2267.264 kb on - strand, within BWI76_RS10725 at 2267.502 kb on + strand at 2267.510 kb on - strand at 2267.535 kb on - strand at 2267.592 kb on - strand at 2267.728 kb on - strand, within BWI76_RS10730 at 2267.861 kb on - strand, within BWI76_RS10730 at 2268.911 kb on - strand, within BWI76_RS10735 at 2269.145 kb on + strand at 2269.145 kb on + strand at 2269.610 kb on - strand, within BWI76_RS10740 at 2269.634 kb on - strand, within BWI76_RS10740 at 2269.652 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 2,266,492 - -0.7 2,266,506 - -0.7 2,266,551 - +0.7 2,266,567 + +0.1 2,266,567 + -0.1 2,266,570 - -0.7 2,266,598 + +0.3 2,266,739 - -1.1 2,266,776 + -3.3 2,266,776 + +4.4 2,267,058 + -0.2 2,267,064 + -0.3 2,267,064 + +0.4 2,267,066 - -2.1 2,267,148 - BWI76_RS10725 0.22 +0.4 2,267,264 - BWI76_RS10725 0.73 -0.7 2,267,502 + +0.7 2,267,510 - +0.2 2,267,535 - -1.5 2,267,592 - -0.5 2,267,728 - BWI76_RS10730 0.21 +2.8 2,267,861 - BWI76_RS10730 0.32 +0.5 2,268,911 - BWI76_RS10735 0.23 +0.3 2,269,145 + +0.1 2,269,145 + -1.2 2,269,610 - BWI76_RS10740 0.85 -0.2 2,269,634 - BWI76_RS10740 0.89 -0.9 2,269,652 + +0.4
Or see this region's nucleotide sequence