Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04815

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04800 and BWI76_RS04805 are separated by 60 nucleotidesBWI76_RS04805 and BWI76_RS04810 are separated by 52 nucleotidesBWI76_RS04810 and BWI76_RS04815 are separated by 9 nucleotidesBWI76_RS04815 and BWI76_RS04820 overlap by 1 nucleotidesBWI76_RS04820 and BWI76_RS04825 are separated by 347 nucleotides BWI76_RS04800: BWI76_RS04800 - preprotein translocase subunit SecA, at 1,002,596 to 1,005,301 _RS04800 BWI76_RS04805: BWI76_RS04805 - 8-oxo-dGTP diphosphatase, at 1,005,362 to 1,005,769 _RS04805 BWI76_RS04810: BWI76_RS04810 - DNA gyrase inhibitor YacG, at 1,005,822 to 1,006,016 _RS04810 BWI76_RS04815: BWI76_RS04815 - cell division protein ZapD, at 1,006,026 to 1,006,769 _RS04815 BWI76_RS04820: BWI76_RS04820 - dephospho-CoA kinase, at 1,006,769 to 1,007,389 _RS04820 BWI76_RS04825: BWI76_RS04825 - guanosine monophosphate reductase, at 1,007,737 to 1,008,780 _RS04825 Position (kb) 1006 1007Strain fitness (log2 ratio) -3 -2 -1 0 1at 1005.103 kb on + strandat 1005.124 kb on - strandat 1005.295 kb on + strandat 1005.545 kb on - strand, within BWI76_RS04805at 1005.682 kb on - strand, within BWI76_RS04805at 1006.038 kb on - strandat 1006.523 kb on + strand, within BWI76_RS04815at 1006.583 kb on + strand, within BWI76_RS04815at 1006.613 kb on - strand, within BWI76_RS04815at 1006.623 kb on - strand, within BWI76_RS04815at 1007.616 kb on - strandat 1007.661 kb on + strandat 1007.665 kb on + strandat 1007.692 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,005,103 + -0.8
1,005,124 - +1.2
1,005,295 + -0.3
1,005,545 - BWI76_RS04805 0.45 +0.7
1,005,682 - BWI76_RS04805 0.78 -3.1
1,006,038 - +0.9
1,006,523 + BWI76_RS04815 0.67 -1.0
1,006,583 + BWI76_RS04815 0.75 +1.2
1,006,613 - BWI76_RS04815 0.79 +1.6
1,006,623 - BWI76_RS04815 0.80 -2.6
1,007,616 - +0.6
1,007,661 + -0.8
1,007,665 + -1.3
1,007,692 + +0.2

Or see this region's nucleotide sequence