Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22335 and AO356_22340 are separated by 100 nucleotides AO356_22340 and AO356_22345 are separated by 108 nucleotides
AO356_22335: AO356_22335 - LysR family transcriptional regulator, at 4,993,620 to 4,994,573
_22335
AO356_22340: AO356_22340 - oxidoreductase, at 4,994,674 to 4,995,537
_22340
AO356_22345: AO356_22345 - potassium transporter KefC, at 4,995,646 to 4,997,472
_22345
Position (kb) 4994
4995
4996 Strain fitness (log2 ratio) -1
0
1
2 at 4993.676 kb on - strand at 4993.744 kb on + strand, within AO356_22335 at 4993.744 kb on + strand, within AO356_22335 at 4993.745 kb on - strand, within AO356_22335 at 4993.745 kb on - strand, within AO356_22335 at 4993.814 kb on - strand, within AO356_22335 at 4993.841 kb on - strand, within AO356_22335 at 4993.841 kb on - strand, within AO356_22335 at 4993.841 kb on - strand, within AO356_22335 at 4993.860 kb on + strand, within AO356_22335 at 4993.861 kb on - strand, within AO356_22335 at 4994.053 kb on + strand, within AO356_22335 at 4994.053 kb on + strand, within AO356_22335 at 4994.053 kb on + strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.218 kb on + strand, within AO356_22335 at 4994.461 kb on - strand, within AO356_22335 at 4994.636 kb on + strand at 4994.637 kb on - strand at 4994.638 kb on + strand at 4994.705 kb on + strand at 4994.909 kb on - strand, within AO356_22340 at 4994.909 kb on - strand, within AO356_22340 at 4995.235 kb on + strand, within AO356_22340 at 4995.235 kb on + strand, within AO356_22340 at 4995.236 kb on - strand, within AO356_22340 at 4995.236 kb on - strand, within AO356_22340 at 4995.236 kb on - strand, within AO356_22340 at 4995.236 kb on - strand, within AO356_22340 at 4995.298 kb on + strand, within AO356_22340 at 4995.298 kb on + strand, within AO356_22340 at 4995.535 kb on + strand at 4995.636 kb on - strand at 4995.860 kb on + strand, within AO356_22345 at 4995.860 kb on + strand, within AO356_22345 at 4995.860 kb on + strand, within AO356_22345 at 4995.861 kb on - strand, within AO356_22345 at 4995.861 kb on - strand, within AO356_22345 at 4996.133 kb on + strand, within AO356_22345 at 4996.133 kb on + strand, within AO356_22345 at 4996.133 kb on + strand, within AO356_22345 at 4996.134 kb on - strand, within AO356_22345
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 4,993,676 - +0.6 4,993,744 + AO356_22335 0.13 +1.3 4,993,744 + AO356_22335 0.13 +0.0 4,993,745 - AO356_22335 0.13 +0.0 4,993,745 - AO356_22335 0.13 +0.4 4,993,814 - AO356_22335 0.20 -0.6 4,993,841 - AO356_22335 0.23 -0.7 4,993,841 - AO356_22335 0.23 -0.7 4,993,841 - AO356_22335 0.23 +0.3 4,993,860 + AO356_22335 0.25 +0.3 4,993,861 - AO356_22335 0.25 +0.8 4,994,053 + AO356_22335 0.45 +0.6 4,994,053 + AO356_22335 0.45 -0.3 4,994,053 + AO356_22335 0.45 +0.1 4,994,054 - AO356_22335 0.45 +0.4 4,994,054 - AO356_22335 0.45 +0.1 4,994,054 - AO356_22335 0.45 -0.2 4,994,054 - AO356_22335 0.45 -0.3 4,994,054 - AO356_22335 0.45 -0.8 4,994,218 + AO356_22335 0.63 -1.4 4,994,461 - AO356_22335 0.88 -0.9 4,994,636 + +0.1 4,994,637 - +0.5 4,994,638 + +0.4 4,994,705 + +0.2 4,994,909 - AO356_22340 0.27 +0.4 4,994,909 - AO356_22340 0.27 -0.9 4,995,235 + AO356_22340 0.65 +0.5 4,995,235 + AO356_22340 0.65 +0.3 4,995,236 - AO356_22340 0.65 -0.6 4,995,236 - AO356_22340 0.65 +0.6 4,995,236 - AO356_22340 0.65 -0.0 4,995,236 - AO356_22340 0.65 +0.8 4,995,298 + AO356_22340 0.72 +0.3 4,995,298 + AO356_22340 0.72 +0.2 4,995,535 + +0.0 4,995,636 - -0.4 4,995,860 + AO356_22345 0.12 +0.4 4,995,860 + AO356_22345 0.12 +0.6 4,995,860 + AO356_22345 0.12 +1.5 4,995,861 - AO356_22345 0.12 +1.1 4,995,861 - AO356_22345 0.12 -0.4 4,996,133 + AO356_22345 0.27 -0.8 4,996,133 + AO356_22345 0.27 -0.1 4,996,133 + AO356_22345 0.27 +1.8 4,996,134 - AO356_22345 0.27 +0.6
Or see this region's nucleotide sequence