Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22265 and AO356_22270 are separated by 213 nucleotides AO356_22270 and AO356_22275 are separated by 320 nucleotides
AO356_22265: AO356_22265 - hypothetical protein, at 4,979,064 to 4,979,924
_22265
AO356_22270: AO356_22270 - hypothetical protein, at 4,980,138 to 4,981,103
_22270
AO356_22275: AO356_22275 - histidine kinase, at 4,981,424 to 4,982,554
_22275
Position (kb)
4980
4981
4982 Strain fitness (log2 ratio)
-1
0
1 at 4979.320 kb on + strand, within AO356_22265 at 4979.320 kb on + strand, within AO356_22265 at 4979.320 kb on + strand, within AO356_22265 at 4979.321 kb on - strand, within AO356_22265 at 4979.321 kb on - strand, within AO356_22265 at 4979.321 kb on - strand, within AO356_22265 at 4979.321 kb on - strand, within AO356_22265 at 4979.566 kb on + strand, within AO356_22265 at 4980.121 kb on + strand at 4980.122 kb on - strand at 4980.187 kb on + strand at 4980.188 kb on - strand at 4980.373 kb on + strand, within AO356_22270 at 4980.374 kb on - strand, within AO356_22270 at 4980.374 kb on - strand, within AO356_22270 at 4980.374 kb on - strand, within AO356_22270 at 4980.481 kb on - strand, within AO356_22270 at 4980.654 kb on + strand, within AO356_22270 at 4980.811 kb on + strand, within AO356_22270 at 4980.921 kb on + strand, within AO356_22270 at 4981.367 kb on + strand at 4981.367 kb on + strand at 4981.368 kb on - strand at 4981.454 kb on - strand at 4981.762 kb on + strand, within AO356_22275 at 4981.762 kb on + strand, within AO356_22275 at 4981.851 kb on - strand, within AO356_22275 at 4982.001 kb on + strand, within AO356_22275 at 4982.001 kb on + strand, within AO356_22275 at 4982.002 kb on - strand, within AO356_22275 at 4982.003 kb on + strand, within AO356_22275 at 4982.003 kb on + strand, within AO356_22275 at 4982.003 kb on + strand, within AO356_22275 at 4982.003 kb on + strand, within AO356_22275 at 4982.003 kb on + strand, within AO356_22275 at 4982.003 kb on + strand, within AO356_22275 at 4982.003 kb on + strand, within AO356_22275 at 4982.004 kb on - strand, within AO356_22275 at 4982.004 kb on - strand, within AO356_22275 at 4982.004 kb on - strand, within AO356_22275 at 4982.004 kb on - strand, within AO356_22275 at 4982.004 kb on - strand, within AO356_22275
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 4,979,320 + AO356_22265 0.30 -0.6 4,979,320 + AO356_22265 0.30 -0.5 4,979,320 + AO356_22265 0.30 +0.6 4,979,321 - AO356_22265 0.30 -1.1 4,979,321 - AO356_22265 0.30 -0.1 4,979,321 - AO356_22265 0.30 +0.5 4,979,321 - AO356_22265 0.30 +0.5 4,979,566 + AO356_22265 0.58 -0.2 4,980,121 + +0.2 4,980,122 - +0.6 4,980,187 + +0.8 4,980,188 - -0.1 4,980,373 + AO356_22270 0.24 +1.2 4,980,374 - AO356_22270 0.24 +0.6 4,980,374 - AO356_22270 0.24 +0.8 4,980,374 - AO356_22270 0.24 +0.6 4,980,481 - AO356_22270 0.36 +0.2 4,980,654 + AO356_22270 0.53 -0.2 4,980,811 + AO356_22270 0.70 +0.1 4,980,921 + AO356_22270 0.81 +0.6 4,981,367 + -0.4 4,981,367 + -0.3 4,981,368 - -1.1 4,981,454 - -0.1 4,981,762 + AO356_22275 0.30 +0.3 4,981,762 + AO356_22275 0.30 +0.8 4,981,851 - AO356_22275 0.38 +0.6 4,982,001 + AO356_22275 0.51 +0.1 4,982,001 + AO356_22275 0.51 +0.1 4,982,002 - AO356_22275 0.51 +0.0 4,982,003 + AO356_22275 0.51 -0.2 4,982,003 + AO356_22275 0.51 -0.1 4,982,003 + AO356_22275 0.51 +0.8 4,982,003 + AO356_22275 0.51 -1.0 4,982,003 + AO356_22275 0.51 -0.1 4,982,003 + AO356_22275 0.51 -0.1 4,982,003 + AO356_22275 0.51 +0.1 4,982,004 - AO356_22275 0.51 +0.3 4,982,004 - AO356_22275 0.51 +0.7 4,982,004 - AO356_22275 0.51 +0.3 4,982,004 - AO356_22275 0.51 -0.3 4,982,004 - AO356_22275 0.51 -0.9
Or see this region's nucleotide sequence