Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22270

Experiment: LB 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22265 and AO356_22270 are separated by 213 nucleotidesAO356_22270 and AO356_22275 are separated by 320 nucleotides AO356_22265: AO356_22265 - hypothetical protein, at 4,979,064 to 4,979,924 _22265 AO356_22270: AO356_22270 - hypothetical protein, at 4,980,138 to 4,981,103 _22270 AO356_22275: AO356_22275 - histidine kinase, at 4,981,424 to 4,982,554 _22275 Position (kb) 4980 4981 4982Strain fitness (log2 ratio) -1 0 1at 4979.320 kb on + strand, within AO356_22265at 4979.320 kb on + strand, within AO356_22265at 4979.320 kb on + strand, within AO356_22265at 4979.321 kb on - strand, within AO356_22265at 4979.321 kb on - strand, within AO356_22265at 4979.321 kb on - strand, within AO356_22265at 4979.321 kb on - strand, within AO356_22265at 4979.566 kb on + strand, within AO356_22265at 4980.121 kb on + strandat 4980.122 kb on - strandat 4980.187 kb on + strandat 4980.188 kb on - strandat 4980.373 kb on + strand, within AO356_22270at 4980.374 kb on - strand, within AO356_22270at 4980.374 kb on - strand, within AO356_22270at 4980.374 kb on - strand, within AO356_22270at 4980.481 kb on - strand, within AO356_22270at 4980.654 kb on + strand, within AO356_22270at 4980.811 kb on + strand, within AO356_22270at 4980.921 kb on + strand, within AO356_22270at 4981.367 kb on + strandat 4981.367 kb on + strandat 4981.368 kb on - strandat 4981.454 kb on - strandat 4981.762 kb on + strand, within AO356_22275at 4981.762 kb on + strand, within AO356_22275at 4981.851 kb on - strand, within AO356_22275at 4982.001 kb on + strand, within AO356_22275at 4982.001 kb on + strand, within AO356_22275at 4982.002 kb on - strand, within AO356_22275at 4982.003 kb on + strand, within AO356_22275at 4982.003 kb on + strand, within AO356_22275at 4982.003 kb on + strand, within AO356_22275at 4982.003 kb on + strand, within AO356_22275at 4982.003 kb on + strand, within AO356_22275at 4982.003 kb on + strand, within AO356_22275at 4982.003 kb on + strand, within AO356_22275at 4982.004 kb on - strand, within AO356_22275at 4982.004 kb on - strand, within AO356_22275at 4982.004 kb on - strand, within AO356_22275at 4982.004 kb on - strand, within AO356_22275at 4982.004 kb on - strand, within AO356_22275

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 20C
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4,979,320 + AO356_22265 0.30 -0.6
4,979,320 + AO356_22265 0.30 -0.5
4,979,320 + AO356_22265 0.30 +0.6
4,979,321 - AO356_22265 0.30 -1.1
4,979,321 - AO356_22265 0.30 -0.1
4,979,321 - AO356_22265 0.30 +0.5
4,979,321 - AO356_22265 0.30 +0.5
4,979,566 + AO356_22265 0.58 -0.2
4,980,121 + +0.2
4,980,122 - +0.6
4,980,187 + +0.8
4,980,188 - -0.1
4,980,373 + AO356_22270 0.24 +1.2
4,980,374 - AO356_22270 0.24 +0.6
4,980,374 - AO356_22270 0.24 +0.8
4,980,374 - AO356_22270 0.24 +0.6
4,980,481 - AO356_22270 0.36 +0.2
4,980,654 + AO356_22270 0.53 -0.2
4,980,811 + AO356_22270 0.70 +0.1
4,980,921 + AO356_22270 0.81 +0.6
4,981,367 + -0.4
4,981,367 + -0.3
4,981,368 - -1.1
4,981,454 - -0.1
4,981,762 + AO356_22275 0.30 +0.3
4,981,762 + AO356_22275 0.30 +0.8
4,981,851 - AO356_22275 0.38 +0.6
4,982,001 + AO356_22275 0.51 +0.1
4,982,001 + AO356_22275 0.51 +0.1
4,982,002 - AO356_22275 0.51 +0.0
4,982,003 + AO356_22275 0.51 -0.2
4,982,003 + AO356_22275 0.51 -0.1
4,982,003 + AO356_22275 0.51 +0.8
4,982,003 + AO356_22275 0.51 -1.0
4,982,003 + AO356_22275 0.51 -0.1
4,982,003 + AO356_22275 0.51 -0.1
4,982,003 + AO356_22275 0.51 +0.1
4,982,004 - AO356_22275 0.51 +0.3
4,982,004 - AO356_22275 0.51 +0.7
4,982,004 - AO356_22275 0.51 +0.3
4,982,004 - AO356_22275 0.51 -0.3
4,982,004 - AO356_22275 0.51 -0.9

Or see this region's nucleotide sequence