Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13920

Experiment: LB 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13915 and AO356_13920 are separated by 13 nucleotidesAO356_13920 and AO356_13925 are separated by 320 nucleotides AO356_13915: AO356_13915 - electron transfer flavoprotein subunit alpha, at 3,155,879 to 3,157,099 _13915 AO356_13920: AO356_13920 - electron transfer flavoprotein subunit beta, at 3,157,113 to 3,157,883 _13920 AO356_13925: AO356_13925 - acetyltransferase, at 3,158,204 to 3,158,770 _13925 Position (kb) 3157 3158Strain fitness (log2 ratio) -3 -2 -1 0 1at 3156.129 kb on + strand, within AO356_13915at 3156.129 kb on + strand, within AO356_13915at 3156.130 kb on - strand, within AO356_13915at 3156.146 kb on + strand, within AO356_13915at 3156.146 kb on + strand, within AO356_13915at 3156.146 kb on + strand, within AO356_13915at 3156.146 kb on + strand, within AO356_13915at 3156.147 kb on - strand, within AO356_13915at 3156.147 kb on - strand, within AO356_13915at 3156.147 kb on - strand, within AO356_13915at 3156.147 kb on - strand, within AO356_13915at 3156.147 kb on - strand, within AO356_13915at 3156.147 kb on - strand, within AO356_13915at 3156.315 kb on + strand, within AO356_13915at 3156.893 kb on + strand, within AO356_13915at 3156.893 kb on + strand, within AO356_13915at 3156.894 kb on - strand, within AO356_13915at 3156.894 kb on - strand, within AO356_13915at 3156.894 kb on - strand, within AO356_13915at 3156.894 kb on - strand, within AO356_13915at 3156.894 kb on - strand, within AO356_13915at 3157.067 kb on + strandat 3157.097 kb on + strandat 3157.097 kb on + strandat 3157.097 kb on + strandat 3157.097 kb on + strandat 3157.098 kb on - strandat 3157.106 kb on + strandat 3157.106 kb on + strandat 3157.106 kb on + strandat 3157.106 kb on + strandat 3157.107 kb on - strandat 3157.107 kb on - strandat 3157.107 kb on - strandat 3157.107 kb on - strandat 3157.118 kb on + strandat 3157.620 kb on + strand, within AO356_13920at 3157.620 kb on + strand, within AO356_13920at 3157.621 kb on - strand, within AO356_13920at 3157.621 kb on - strand, within AO356_13920at 3157.893 kb on + strandat 3157.893 kb on + strandat 3157.894 kb on - strandat 3157.894 kb on - strandat 3157.894 kb on - strandat 3157.936 kb on + strandat 3157.936 kb on + strandat 3157.936 kb on + strandat 3157.937 kb on - strandat 3158.002 kb on + strandat 3158.003 kb on - strandat 3158.199 kb on + strandat 3158.199 kb on + strandat 3158.200 kb on - strandat 3158.211 kb on + strandat 3158.211 kb on + strandat 3158.212 kb on - strandat 3158.212 kb on - strandat 3158.212 kb on - strandat 3158.291 kb on + strand, within AO356_13925at 3158.292 kb on - strand, within AO356_13925at 3158.292 kb on - strand, within AO356_13925at 3158.292 kb on - strand, within AO356_13925at 3158.292 kb on - strand, within AO356_13925at 3158.292 kb on - strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.435 kb on + strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.436 kb on - strand, within AO356_13925at 3158.492 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.522 kb on + strand, within AO356_13925at 3158.523 kb on - strand, within AO356_13925at 3158.523 kb on - strand, within AO356_13925at 3158.523 kb on - strand, within AO356_13925at 3158.523 kb on - strand, within AO356_13925at 3158.524 kb on + strand, within AO356_13925at 3158.524 kb on + strand, within AO356_13925at 3158.525 kb on - strand, within AO356_13925at 3158.525 kb on - strand, within AO356_13925at 3158.525 kb on - strand, within AO356_13925at 3158.525 kb on - strand, within AO356_13925at 3158.525 kb on - strand, within AO356_13925at 3158.557 kb on + strand, within AO356_13925at 3158.557 kb on + strand, within AO356_13925at 3158.558 kb on - strand, within AO356_13925at 3158.642 kb on + strand, within AO356_13925at 3158.672 kb on + strand, within AO356_13925at 3158.673 kb on - strand, within AO356_13925at 3158.736 kb on + strandat 3158.737 kb on - strandat 3158.750 kb on + strandat 3158.751 kb on - strandat 3158.751 kb on - strandat 3158.823 kb on + strandat 3158.823 kb on + strandat 3158.823 kb on + strandat 3158.823 kb on + strandat 3158.824 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 20C
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3,156,129 + AO356_13915 0.20 -0.8
3,156,129 + AO356_13915 0.20 -0.6
3,156,130 - AO356_13915 0.21 -0.7
3,156,146 + AO356_13915 0.22 -0.0
3,156,146 + AO356_13915 0.22 -0.8
3,156,146 + AO356_13915 0.22 -1.1
3,156,146 + AO356_13915 0.22 -0.7
3,156,147 - AO356_13915 0.22 +1.4
3,156,147 - AO356_13915 0.22 -1.1
3,156,147 - AO356_13915 0.22 +0.5
3,156,147 - AO356_13915 0.22 -0.5
3,156,147 - AO356_13915 0.22 -0.9
3,156,147 - AO356_13915 0.22 -0.9
3,156,315 + AO356_13915 0.36 -0.1
3,156,893 + AO356_13915 0.83 +0.6
3,156,893 + AO356_13915 0.83 +0.1
3,156,894 - AO356_13915 0.83 -0.8
3,156,894 - AO356_13915 0.83 -0.2
3,156,894 - AO356_13915 0.83 -0.0
3,156,894 - AO356_13915 0.83 -0.8
3,156,894 - AO356_13915 0.83 +0.3
3,157,067 + +0.1
3,157,097 + -1.1
3,157,097 + -0.6
3,157,097 + -0.2
3,157,097 + -0.0
3,157,098 - -0.6
3,157,106 + -1.9
3,157,106 + -0.3
3,157,106 + -0.1
3,157,106 + -0.2
3,157,107 - -0.1
3,157,107 - -0.8
3,157,107 - +0.3
3,157,107 - +1.1
3,157,118 + -0.5
3,157,620 + AO356_13920 0.66 +0.0
3,157,620 + AO356_13920 0.66 -1.0
3,157,621 - AO356_13920 0.66 -1.0
3,157,621 - AO356_13920 0.66 -0.1
3,157,893 + +0.6
3,157,893 + -0.1
3,157,894 - +0.1
3,157,894 - +0.0
3,157,894 - -0.0
3,157,936 + +0.1
3,157,936 + +0.5
3,157,936 + -0.2
3,157,937 - -0.3
3,158,002 + -0.9
3,158,003 - +0.3
3,158,199 + +0.3
3,158,199 + +0.4
3,158,200 - -0.4
3,158,211 + -0.8
3,158,211 + +0.3
3,158,212 - -0.8
3,158,212 - +0.5
3,158,212 - +0.4
3,158,291 + AO356_13925 0.15 -0.1
3,158,292 - AO356_13925 0.16 +0.8
3,158,292 - AO356_13925 0.16 -0.9
3,158,292 - AO356_13925 0.16 +0.6
3,158,292 - AO356_13925 0.16 +0.4
3,158,292 - AO356_13925 0.16 +1.0
3,158,435 + AO356_13925 0.41 -0.0
3,158,435 + AO356_13925 0.41 -0.3
3,158,435 + AO356_13925 0.41 -0.1
3,158,435 + AO356_13925 0.41 +0.4
3,158,435 + AO356_13925 0.41 +0.3
3,158,435 + AO356_13925 0.41 +1.1
3,158,436 - AO356_13925 0.41 +0.2
3,158,436 - AO356_13925 0.41 +0.8
3,158,436 - AO356_13925 0.41 -0.3
3,158,436 - AO356_13925 0.41 +0.1
3,158,436 - AO356_13925 0.41 -0.4
3,158,436 - AO356_13925 0.41 +0.0
3,158,492 + AO356_13925 0.51 +0.4
3,158,522 + AO356_13925 0.56 +0.5
3,158,522 + AO356_13925 0.56 +0.8
3,158,522 + AO356_13925 0.56 +0.4
3,158,522 + AO356_13925 0.56 -0.4
3,158,522 + AO356_13925 0.56 +0.8
3,158,522 + AO356_13925 0.56 -0.9
3,158,522 + AO356_13925 0.56 +0.2
3,158,523 - AO356_13925 0.56 +0.2
3,158,523 - AO356_13925 0.56 -2.8
3,158,523 - AO356_13925 0.56 -0.2
3,158,523 - AO356_13925 0.56 -0.6
3,158,524 + AO356_13925 0.56 +0.1
3,158,524 + AO356_13925 0.56 -0.2
3,158,525 - AO356_13925 0.57 +0.6
3,158,525 - AO356_13925 0.57 -0.3
3,158,525 - AO356_13925 0.57 +0.6
3,158,525 - AO356_13925 0.57 -2.5
3,158,525 - AO356_13925 0.57 +0.3
3,158,557 + AO356_13925 0.62 +0.3
3,158,557 + AO356_13925 0.62 +0.5
3,158,558 - AO356_13925 0.62 -0.1
3,158,642 + AO356_13925 0.77 +0.3
3,158,672 + AO356_13925 0.83 -0.5
3,158,673 - AO356_13925 0.83 +0.2
3,158,736 + -0.4
3,158,737 - +0.2
3,158,750 + -0.2
3,158,751 - +0.4
3,158,751 - -0.2
3,158,823 + -0.3
3,158,823 + +0.0
3,158,823 + +0.9
3,158,823 + +0.4
3,158,824 - -0.3

Or see this region's nucleotide sequence