Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03020 and AO356_03025 are separated by 337 nucleotides AO356_03025 and AO356_03030 are separated by 2 nucleotides AO356_03030 and AO356_03035 overlap by 4 nucleotides AO356_03035 and AO356_03040 are separated by 126 nucleotides
AO356_03020: AO356_03020 - ammonium transporter, at 673,155 to 674,363
_03020
AO356_03025: AO356_03025 - hypothetical protein, at 674,701 to 675,015
_03025
AO356_03030: AO356_03030 - hypothetical protein, at 675,018 to 675,407
_03030
AO356_03035: AO356_03035 - hypothetical protein, at 675,404 to 675,739
_03035
AO356_03040: AO356_03040 - deoxyguanosinetriphosphate triphosphohydrolase, at 675,866 to 677,194
_03040
Position (kb) 674
675
676 Strain fitness (log2 ratio) -2
-1
0
1 at 674.024 kb on + strand, within AO356_03020 at 674.024 kb on + strand, within AO356_03020 at 674.093 kb on - strand, within AO356_03020 at 674.113 kb on - strand, within AO356_03020 at 674.170 kb on + strand, within AO356_03020 at 674.170 kb on + strand, within AO356_03020 at 674.171 kb on - strand, within AO356_03020 at 674.171 kb on - strand, within AO356_03020 at 674.316 kb on - strand at 674.316 kb on - strand at 674.482 kb on + strand at 674.482 kb on + strand at 674.483 kb on - strand at 674.483 kb on - strand at 674.532 kb on + strand at 674.533 kb on - strand at 674.597 kb on + strand at 674.597 kb on + strand at 674.597 kb on + strand at 674.598 kb on - strand at 674.598 kb on - strand at 674.598 kb on - strand at 674.626 kb on - strand at 674.662 kb on + strand at 674.662 kb on + strand at 674.663 kb on - strand at 674.686 kb on + strand at 674.915 kb on + strand, within AO356_03025 at 674.915 kb on + strand, within AO356_03025 at 674.916 kb on - strand, within AO356_03025 at 674.932 kb on + strand, within AO356_03025 at 674.932 kb on + strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.937 kb on - strand, within AO356_03025 at 674.937 kb on - strand, within AO356_03025 at 674.937 kb on - strand, within AO356_03025 at 674.960 kb on + strand, within AO356_03025 at 674.961 kb on - strand, within AO356_03025 at 675.241 kb on + strand, within AO356_03030 at 675.252 kb on + strand, within AO356_03030 at 675.252 kb on + strand, within AO356_03030 at 675.253 kb on - strand, within AO356_03030 at 675.288 kb on + strand, within AO356_03030 at 675.289 kb on - strand, within AO356_03030 at 675.289 kb on - strand, within AO356_03030 at 675.289 kb on - strand, within AO356_03030 at 675.336 kb on + strand, within AO356_03030 at 675.336 kb on + strand, within AO356_03030 at 675.337 kb on - strand, within AO356_03030 at 675.337 kb on - strand, within AO356_03030 at 675.418 kb on + strand at 675.418 kb on + strand at 675.772 kb on + strand at 675.772 kb on + strand at 675.772 kb on + strand at 675.773 kb on - strand at 675.773 kb on - strand at 675.773 kb on - strand at 675.773 kb on - strand at 675.773 kb on - strand at 675.776 kb on + strand at 675.776 kb on + strand at 675.776 kb on + strand at 675.777 kb on - strand at 675.777 kb on - strand at 675.797 kb on + strand at 675.831 kb on + strand at 675.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 674,024 + AO356_03020 0.72 -2.4 674,024 + AO356_03020 0.72 +0.8 674,093 - AO356_03020 0.78 -0.6 674,113 - AO356_03020 0.79 +0.1 674,170 + AO356_03020 0.84 +0.4 674,170 + AO356_03020 0.84 +1.4 674,171 - AO356_03020 0.84 +0.5 674,171 - AO356_03020 0.84 -0.2 674,316 - +0.6 674,316 - -0.0 674,482 + +0.5 674,482 + -1.0 674,483 - -0.1 674,483 - -1.3 674,532 + +0.1 674,533 - -0.3 674,597 + +0.1 674,597 + -0.1 674,597 + +0.2 674,598 - +1.1 674,598 - +0.0 674,598 - +0.3 674,626 - +1.1 674,662 + +0.4 674,662 + +0.3 674,663 - +0.8 674,686 + -0.1 674,915 + AO356_03025 0.68 -0.2 674,915 + AO356_03025 0.68 +0.8 674,916 - AO356_03025 0.68 +1.2 674,932 + AO356_03025 0.73 -0.9 674,932 + AO356_03025 0.73 +0.4 674,933 - AO356_03025 0.74 -0.3 674,933 - AO356_03025 0.74 +0.5 674,933 - AO356_03025 0.74 -0.1 674,933 - AO356_03025 0.74 -0.5 674,936 + AO356_03025 0.75 +0.1 674,936 + AO356_03025 0.75 +1.4 674,936 + AO356_03025 0.75 +1.3 674,936 + AO356_03025 0.75 +0.4 674,936 + AO356_03025 0.75 -0.5 674,937 - AO356_03025 0.75 -0.6 674,937 - AO356_03025 0.75 +0.8 674,937 - AO356_03025 0.75 +0.1 674,960 + AO356_03025 0.82 -0.7 674,961 - AO356_03025 0.83 +0.2 675,241 + AO356_03030 0.57 +0.6 675,252 + AO356_03030 0.60 -0.3 675,252 + AO356_03030 0.60 +0.1 675,253 - AO356_03030 0.60 +0.6 675,288 + AO356_03030 0.69 +0.0 675,289 - AO356_03030 0.69 -0.1 675,289 - AO356_03030 0.69 +0.2 675,289 - AO356_03030 0.69 +0.0 675,336 + AO356_03030 0.82 +0.3 675,336 + AO356_03030 0.82 -0.4 675,337 - AO356_03030 0.82 +1.1 675,337 - AO356_03030 0.82 +0.4 675,418 + +0.2 675,418 + -0.2 675,772 + +0.6 675,772 + +0.2 675,772 + -0.1 675,773 - +0.6 675,773 - -0.3 675,773 - +0.2 675,773 - +0.3 675,773 - -0.0 675,776 + +0.2 675,776 + +0.7 675,776 + +0.3 675,777 - +0.1 675,777 - +0.8 675,797 + -0.3 675,831 + -0.4 675,877 + +0.0
Or see this region's nucleotide sequence