Experiment: LB no stress 48 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_606 and Pf6N2E2_607 are separated by 807 nucleotides Pf6N2E2_607 and Pf6N2E2_608 are separated by 132 nucleotides
Pf6N2E2_606 - FIG005548: transport protein, at 682,258 to 684,633
_606
Pf6N2E2_607 - hypothetical protein, at 685,441 to 690,153
_607
Pf6N2E2_608 - Transcriptional regulator of the arabinose operon in Shewanella, GntR family, at 690,286 to 691,005
_608
Position (kb) 685
686
687
688
689
690
691 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 684.711 kb on - strand at 684.926 kb on + strand at 684.927 kb on - strand at 684.928 kb on + strand at 684.929 kb on + strand at 684.929 kb on - strand at 684.929 kb on - strand at 684.929 kb on - strand at 684.929 kb on - strand at 685.034 kb on + strand at 685.035 kb on - strand at 685.047 kb on + strand at 685.047 kb on + strand at 685.047 kb on + strand at 685.047 kb on + strand at 685.047 kb on + strand at 685.047 kb on + strand at 685.047 kb on + strand at 685.048 kb on - strand at 685.048 kb on - strand at 685.048 kb on - strand at 685.048 kb on - strand at 685.048 kb on - strand at 685.048 kb on - strand at 685.051 kb on - strand at 685.081 kb on - strand at 685.127 kb on + strand at 685.128 kb on - strand at 685.184 kb on - strand at 685.528 kb on - strand at 685.625 kb on + strand at 685.626 kb on - strand at 685.677 kb on - strand at 685.763 kb on + strand at 685.764 kb on - strand at 686.005 kb on - strand, within Pf6N2E2_607 at 686.005 kb on - strand, within Pf6N2E2_607 at 686.035 kb on + strand, within Pf6N2E2_607 at 686.035 kb on + strand, within Pf6N2E2_607 at 686.150 kb on + strand, within Pf6N2E2_607 at 686.151 kb on - strand, within Pf6N2E2_607 at 686.412 kb on - strand, within Pf6N2E2_607 at 686.477 kb on + strand, within Pf6N2E2_607 at 686.477 kb on + strand, within Pf6N2E2_607 at 686.478 kb on - strand, within Pf6N2E2_607 at 686.478 kb on - strand, within Pf6N2E2_607 at 686.531 kb on + strand, within Pf6N2E2_607 at 686.627 kb on - strand, within Pf6N2E2_607 at 686.783 kb on + strand, within Pf6N2E2_607 at 686.783 kb on + strand, within Pf6N2E2_607 at 686.784 kb on - strand, within Pf6N2E2_607 at 686.822 kb on + strand, within Pf6N2E2_607 at 686.823 kb on - strand, within Pf6N2E2_607 at 686.823 kb on - strand, within Pf6N2E2_607 at 686.831 kb on + strand, within Pf6N2E2_607 at 686.831 kb on + strand, within Pf6N2E2_607 at 687.047 kb on + strand, within Pf6N2E2_607 at 687.047 kb on + strand, within Pf6N2E2_607 at 687.191 kb on + strand, within Pf6N2E2_607 at 687.192 kb on - strand, within Pf6N2E2_607 at 687.194 kb on + strand at 687.335 kb on - strand, within Pf6N2E2_607 at 687.416 kb on + strand, within Pf6N2E2_607 at 687.461 kb on + strand, within Pf6N2E2_607 at 687.461 kb on + strand, within Pf6N2E2_607 at 687.461 kb on + strand, within Pf6N2E2_607 at 687.461 kb on + strand, within Pf6N2E2_607 at 687.462 kb on - strand, within Pf6N2E2_607 at 687.916 kb on + strand, within Pf6N2E2_607 at 688.043 kb on + strand, within Pf6N2E2_607 at 688.043 kb on + strand, within Pf6N2E2_607 at 688.044 kb on - strand, within Pf6N2E2_607 at 688.161 kb on - strand, within Pf6N2E2_607 at 688.161 kb on - strand, within Pf6N2E2_607 at 688.202 kb on + strand, within Pf6N2E2_607 at 688.202 kb on + strand, within Pf6N2E2_607 at 688.203 kb on - strand, within Pf6N2E2_607 at 688.298 kb on + strand, within Pf6N2E2_607 at 688.317 kb on + strand, within Pf6N2E2_607 at 688.317 kb on + strand, within Pf6N2E2_607 at 688.317 kb on + strand, within Pf6N2E2_607 at 688.317 kb on + strand, within Pf6N2E2_607 at 688.317 kb on + strand, within Pf6N2E2_607 at 688.318 kb on - strand, within Pf6N2E2_607 at 688.318 kb on - strand, within Pf6N2E2_607 at 688.318 kb on - strand, within Pf6N2E2_607 at 688.318 kb on - strand, within Pf6N2E2_607 at 688.318 kb on - strand, within Pf6N2E2_607 at 688.318 kb on - strand, within Pf6N2E2_607 at 688.318 kb on - strand, within Pf6N2E2_607 at 688.318 kb on - strand, within Pf6N2E2_607 at 688.318 kb on - strand, within Pf6N2E2_607 at 688.319 kb on + strand, within Pf6N2E2_607 at 688.331 kb on + strand, within Pf6N2E2_607 at 688.647 kb on - strand, within Pf6N2E2_607 at 688.647 kb on - strand, within Pf6N2E2_607 at 688.656 kb on - strand, within Pf6N2E2_607 at 688.656 kb on - strand, within Pf6N2E2_607 at 688.895 kb on + strand, within Pf6N2E2_607 at 688.951 kb on + strand, within Pf6N2E2_607 at 688.951 kb on + strand, within Pf6N2E2_607 at 688.951 kb on + strand, within Pf6N2E2_607 at 688.951 kb on + strand, within Pf6N2E2_607 at 688.952 kb on - strand, within Pf6N2E2_607 at 688.989 kb on + strand, within Pf6N2E2_607 at 689.186 kb on + strand, within Pf6N2E2_607 at 689.187 kb on - strand, within Pf6N2E2_607 at 689.187 kb on - strand, within Pf6N2E2_607 at 689.336 kb on + strand, within Pf6N2E2_607 at 689.336 kb on + strand, within Pf6N2E2_607 at 689.336 kb on + strand, within Pf6N2E2_607 at 689.337 kb on - strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.528 kb on + strand, within Pf6N2E2_607 at 689.528 kb on + strand, within Pf6N2E2_607 at 689.529 kb on - strand, within Pf6N2E2_607 at 689.638 kb on - strand, within Pf6N2E2_607 at 690.197 kb on + strand at 690.197 kb on + strand at 690.224 kb on + strand at 690.224 kb on + strand at 690.225 kb on - strand at 690.225 kb on - strand at 690.226 kb on + strand at 690.226 kb on + strand at 690.226 kb on + strand at 690.227 kb on - strand at 690.227 kb on - strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.280 kb on + strand at 690.280 kb on + strand at 690.281 kb on - strand at 690.281 kb on - strand at 690.285 kb on - strand at 690.285 kb on - strand at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.760 kb on - strand, within Pf6N2E2_608 at 690.760 kb on - strand, within Pf6N2E2_608 at 690.809 kb on + strand, within Pf6N2E2_608 at 690.809 kb on + strand, within Pf6N2E2_608 at 690.810 kb on - strand, within Pf6N2E2_608 at 690.872 kb on + strand, within Pf6N2E2_608 at 690.873 kb on - strand, within Pf6N2E2_608 at 690.873 kb on - strand, within Pf6N2E2_608 at 690.907 kb on - strand, within Pf6N2E2_608 at 690.998 kb on + strand at 691.047 kb on + strand at 691.048 kb on - strand at 691.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 48 hours remove 684,711 - +0.2 684,926 + +0.7 684,927 - -1.3 684,928 + +0.0 684,929 + -1.4 684,929 - -1.2 684,929 - -0.3 684,929 - -0.1 684,929 - +0.1 685,034 + +0.1 685,035 - -0.3 685,047 + -2.4 685,047 + +0.1 685,047 + +0.0 685,047 + +0.1 685,047 + -0.3 685,047 + -1.3 685,047 + -0.7 685,048 - +0.1 685,048 - -0.2 685,048 - +0.1 685,048 - -2.5 685,048 - +0.6 685,048 - +1.1 685,051 - -1.3 685,081 - +0.2 685,127 + -1.0 685,128 - +1.0 685,184 - +0.2 685,528 - -1.1 685,625 + -0.3 685,626 - +0.7 685,677 - -0.6 685,763 + +1.5 685,764 - +0.3 686,005 - Pf6N2E2_607 0.12 -0.9 686,005 - Pf6N2E2_607 0.12 -0.8 686,035 + Pf6N2E2_607 0.13 +0.4 686,035 + Pf6N2E2_607 0.13 +0.8 686,150 + Pf6N2E2_607 0.15 +0.8 686,151 - Pf6N2E2_607 0.15 -0.2 686,412 - Pf6N2E2_607 0.21 +0.6 686,477 + Pf6N2E2_607 0.22 +0.5 686,477 + Pf6N2E2_607 0.22 -1.3 686,478 - Pf6N2E2_607 0.22 +0.8 686,478 - Pf6N2E2_607 0.22 +0.7 686,531 + Pf6N2E2_607 0.23 +0.3 686,627 - Pf6N2E2_607 0.25 -0.0 686,783 + Pf6N2E2_607 0.28 -2.1 686,783 + Pf6N2E2_607 0.28 -0.3 686,784 - Pf6N2E2_607 0.28 -2.8 686,822 + Pf6N2E2_607 0.29 +0.4 686,823 - Pf6N2E2_607 0.29 +0.3 686,823 - Pf6N2E2_607 0.29 -0.8 686,831 + Pf6N2E2_607 0.29 -0.9 686,831 + Pf6N2E2_607 0.29 +1.7 687,047 + Pf6N2E2_607 0.34 -0.4 687,047 + Pf6N2E2_607 0.34 +0.5 687,191 + Pf6N2E2_607 0.37 +0.3 687,192 - Pf6N2E2_607 0.37 +0.0 687,194 + +0.5 687,335 - Pf6N2E2_607 0.40 -0.8 687,416 + Pf6N2E2_607 0.42 +0.3 687,461 + Pf6N2E2_607 0.43 -0.5 687,461 + Pf6N2E2_607 0.43 +0.7 687,461 + Pf6N2E2_607 0.43 -0.5 687,461 + Pf6N2E2_607 0.43 -0.8 687,462 - Pf6N2E2_607 0.43 -0.1 687,916 + Pf6N2E2_607 0.53 +0.0 688,043 + Pf6N2E2_607 0.55 -1.2 688,043 + Pf6N2E2_607 0.55 -0.2 688,044 - Pf6N2E2_607 0.55 +1.8 688,161 - Pf6N2E2_607 0.58 -2.5 688,161 - Pf6N2E2_607 0.58 -1.8 688,202 + Pf6N2E2_607 0.59 -0.4 688,202 + Pf6N2E2_607 0.59 +1.0 688,203 - Pf6N2E2_607 0.59 -0.8 688,298 + Pf6N2E2_607 0.61 -0.4 688,317 + Pf6N2E2_607 0.61 +0.3 688,317 + Pf6N2E2_607 0.61 +0.3 688,317 + Pf6N2E2_607 0.61 -0.1 688,317 + Pf6N2E2_607 0.61 +0.2 688,317 + Pf6N2E2_607 0.61 +0.9 688,318 - Pf6N2E2_607 0.61 -1.1 688,318 - Pf6N2E2_607 0.61 -0.8 688,318 - Pf6N2E2_607 0.61 -0.1 688,318 - Pf6N2E2_607 0.61 -0.1 688,318 - Pf6N2E2_607 0.61 +0.4 688,318 - Pf6N2E2_607 0.61 +0.5 688,318 - Pf6N2E2_607 0.61 +0.4 688,318 - Pf6N2E2_607 0.61 -1.5 688,318 - Pf6N2E2_607 0.61 -0.5 688,319 + Pf6N2E2_607 0.61 -1.1 688,331 + Pf6N2E2_607 0.61 -0.1 688,647 - Pf6N2E2_607 0.68 -0.1 688,647 - Pf6N2E2_607 0.68 +0.8 688,656 - Pf6N2E2_607 0.68 +0.3 688,656 - Pf6N2E2_607 0.68 -1.7 688,895 + Pf6N2E2_607 0.73 -1.2 688,951 + Pf6N2E2_607 0.74 -0.2 688,951 + Pf6N2E2_607 0.74 -0.7 688,951 + Pf6N2E2_607 0.74 -0.2 688,951 + Pf6N2E2_607 0.74 -1.1 688,952 - Pf6N2E2_607 0.74 +0.2 688,989 + Pf6N2E2_607 0.75 -0.9 689,186 + Pf6N2E2_607 0.79 +0.2 689,187 - Pf6N2E2_607 0.79 -1.1 689,187 - Pf6N2E2_607 0.79 +0.5 689,336 + Pf6N2E2_607 0.83 +0.3 689,336 + Pf6N2E2_607 0.83 +0.3 689,336 + Pf6N2E2_607 0.83 -0.3 689,337 - Pf6N2E2_607 0.83 -0.9 689,522 + Pf6N2E2_607 0.87 +0.1 689,522 + Pf6N2E2_607 0.87 -0.5 689,522 + Pf6N2E2_607 0.87 +0.1 689,522 + Pf6N2E2_607 0.87 -0.8 689,528 + Pf6N2E2_607 0.87 -0.8 689,528 + Pf6N2E2_607 0.87 -1.2 689,529 - Pf6N2E2_607 0.87 +0.9 689,638 - Pf6N2E2_607 0.89 +0.0 690,197 + -0.2 690,197 + -0.7 690,224 + +0.4 690,224 + +0.8 690,225 - +0.5 690,225 - -1.4 690,226 + +1.5 690,226 + +0.8 690,226 + -1.0 690,227 - +0.3 690,227 - +0.4 690,228 + +0.2 690,228 + +0.2 690,228 + +0.7 690,228 + +0.9 690,228 + +1.3 690,228 + -2.5 690,228 + -1.6 690,228 + -0.6 690,228 + +1.0 690,228 + +1.0 690,228 + +0.0 690,228 + +0.4 690,229 - -1.4 690,229 - -0.3 690,229 - -0.1 690,229 - -0.4 690,229 - -0.3 690,229 - -1.2 690,229 - +2.3 690,229 - +0.8 690,229 - +3.1 690,280 + -0.7 690,280 + -0.6 690,281 - +0.0 690,281 - +0.2 690,285 - -0.3 690,285 - -1.1 690,759 + Pf6N2E2_608 0.66 +0.4 690,759 + Pf6N2E2_608 0.66 -0.6 690,759 + Pf6N2E2_608 0.66 -0.1 690,759 + Pf6N2E2_608 0.66 -1.8 690,759 + Pf6N2E2_608 0.66 +0.5 690,759 + Pf6N2E2_608 0.66 +0.2 690,760 - Pf6N2E2_608 0.66 +0.8 690,760 - Pf6N2E2_608 0.66 +0.2 690,809 + Pf6N2E2_608 0.73 +0.3 690,809 + Pf6N2E2_608 0.73 -0.5 690,810 - Pf6N2E2_608 0.73 -1.0 690,872 + Pf6N2E2_608 0.81 -0.1 690,873 - Pf6N2E2_608 0.82 +0.1 690,873 - Pf6N2E2_608 0.82 -0.5 690,907 - Pf6N2E2_608 0.86 +0.6 690,998 + +0.7 691,047 + +0.7 691,048 - +0.9 691,119 - -0.4
Or see this region's nucleotide sequence