Experiment: LB no stress 48 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3689 and Pf6N2E2_3690 are separated by 278 nucleotides Pf6N2E2_3690 and Pf6N2E2_3691 are separated by 34 nucleotides
Pf6N2E2_3689 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 4,302,124 to 4,303,734
_3689
Pf6N2E2_3690 - Na(+)/H(+) antiporter, at 4,304,013 to 4,305,755
_3690
Pf6N2E2_3691 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 4,305,790 to 4,309,152
_3691
Position (kb) 4304
4305
4306 Strain fitness (log2 ratio) -1
0
1 at 4303.732 kb on + strand at 4303.889 kb on + strand at 4303.890 kb on - strand at 4303.890 kb on - strand at 4303.945 kb on + strand at 4303.946 kb on - strand at 4303.946 kb on - strand at 4303.946 kb on - strand at 4303.946 kb on - strand at 4303.991 kb on + strand at 4303.991 kb on + strand at 4304.021 kb on + strand at 4304.022 kb on - strand at 4304.063 kb on - strand at 4304.063 kb on - strand at 4304.182 kb on - strand at 4304.182 kb on - strand at 4304.182 kb on - strand at 4304.193 kb on + strand, within Pf6N2E2_3690 at 4304.194 kb on - strand, within Pf6N2E2_3690 at 4304.194 kb on - strand, within Pf6N2E2_3690 at 4304.757 kb on + strand, within Pf6N2E2_3690 at 4304.758 kb on - strand, within Pf6N2E2_3690 at 4304.866 kb on + strand, within Pf6N2E2_3690 at 4304.866 kb on + strand, within Pf6N2E2_3690 at 4304.867 kb on - strand, within Pf6N2E2_3690 at 4304.867 kb on - strand, within Pf6N2E2_3690 at 4305.014 kb on + strand, within Pf6N2E2_3690 at 4305.100 kb on - strand, within Pf6N2E2_3690 at 4305.100 kb on - strand, within Pf6N2E2_3690 at 4305.256 kb on + strand, within Pf6N2E2_3690 at 4305.256 kb on + strand, within Pf6N2E2_3690 at 4305.256 kb on + strand, within Pf6N2E2_3690 at 4305.256 kb on + strand, within Pf6N2E2_3690 at 4305.256 kb on + strand, within Pf6N2E2_3690 at 4305.257 kb on - strand, within Pf6N2E2_3690 at 4305.257 kb on - strand, within Pf6N2E2_3690 at 4305.257 kb on - strand, within Pf6N2E2_3690 at 4305.257 kb on - strand, within Pf6N2E2_3690 at 4305.384 kb on - strand, within Pf6N2E2_3690 at 4305.508 kb on + strand, within Pf6N2E2_3690 at 4305.509 kb on - strand, within Pf6N2E2_3690 at 4305.549 kb on + strand, within Pf6N2E2_3690 at 4305.550 kb on - strand, within Pf6N2E2_3690 at 4305.753 kb on + strand at 4305.754 kb on - strand at 4305.789 kb on + strand at 4305.789 kb on + strand at 4305.790 kb on - strand at 4305.810 kb on + strand at 4305.887 kb on + strand at 4305.988 kb on - strand at 4305.997 kb on + strand at 4305.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 48 hours remove 4,303,732 + +0.6 4,303,889 + +0.3 4,303,890 - -0.3 4,303,890 - -0.5 4,303,945 + -0.1 4,303,946 - -0.3 4,303,946 - -0.9 4,303,946 - -0.0 4,303,946 - -0.9 4,303,991 + +1.1 4,303,991 + +0.8 4,304,021 + -0.6 4,304,022 - +0.2 4,304,063 - -1.4 4,304,063 - +1.1 4,304,182 - +0.9 4,304,182 - +0.8 4,304,182 - -0.8 4,304,193 + Pf6N2E2_3690 0.10 -1.4 4,304,194 - Pf6N2E2_3690 0.10 -1.4 4,304,194 - Pf6N2E2_3690 0.10 +1.4 4,304,757 + Pf6N2E2_3690 0.43 -1.6 4,304,758 - Pf6N2E2_3690 0.43 -0.5 4,304,866 + Pf6N2E2_3690 0.49 -1.1 4,304,866 + Pf6N2E2_3690 0.49 +0.4 4,304,867 - Pf6N2E2_3690 0.49 -0.5 4,304,867 - Pf6N2E2_3690 0.49 -0.5 4,305,014 + Pf6N2E2_3690 0.57 -0.9 4,305,100 - Pf6N2E2_3690 0.62 -0.9 4,305,100 - Pf6N2E2_3690 0.62 +1.0 4,305,256 + Pf6N2E2_3690 0.71 -1.2 4,305,256 + Pf6N2E2_3690 0.71 -1.0 4,305,256 + Pf6N2E2_3690 0.71 +0.4 4,305,256 + Pf6N2E2_3690 0.71 -1.4 4,305,256 + Pf6N2E2_3690 0.71 +0.2 4,305,257 - Pf6N2E2_3690 0.71 -1.4 4,305,257 - Pf6N2E2_3690 0.71 -0.8 4,305,257 - Pf6N2E2_3690 0.71 -1.4 4,305,257 - Pf6N2E2_3690 0.71 +1.4 4,305,384 - Pf6N2E2_3690 0.79 -1.4 4,305,508 + Pf6N2E2_3690 0.86 -0.9 4,305,509 - Pf6N2E2_3690 0.86 -0.9 4,305,549 + Pf6N2E2_3690 0.88 -0.9 4,305,550 - Pf6N2E2_3690 0.88 -0.4 4,305,753 + +0.9 4,305,754 - -1.0 4,305,789 + +1.2 4,305,789 + -0.9 4,305,790 - +0.1 4,305,810 + -0.2 4,305,887 + -0.3 4,305,988 - -0.2 4,305,997 + -0.6 4,305,998 - -1.7
Or see this region's nucleotide sequence