Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17330

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17320 and BWI76_RS17325 overlap by 1 nucleotidesBWI76_RS17325 and BWI76_RS17330 overlap by 4 nucleotidesBWI76_RS17330 and BWI76_RS17335 overlap by 4 nucleotides BWI76_RS17320: BWI76_RS17320 - respiratory nitrate reductase subunit gamma, at 3,585,392 to 3,586,069 _RS17320 BWI76_RS17325: BWI76_RS17325 - nitrate reductase molybdenum cofactor assembly chaperone, at 3,586,069 to 3,586,779 _RS17325 BWI76_RS17330: BWI76_RS17330 - nitrate reductase subunit beta, at 3,586,776 to 3,588,311 _RS17330 BWI76_RS17335: BWI76_RS17335 - nitrate reductase subunit alpha, at 3,588,308 to 3,592,051 _RS17335 Position (kb) 3586 3587 3588 3589Strain fitness (log2 ratio) -2 -1 0 1at 3585.852 kb on + strand, within BWI76_RS17320at 3585.976 kb on - strand, within BWI76_RS17320at 3586.413 kb on + strand, within BWI76_RS17325at 3586.423 kb on + strand, within BWI76_RS17325at 3586.513 kb on - strand, within BWI76_RS17325at 3586.573 kb on + strand, within BWI76_RS17325at 3586.661 kb on - strand, within BWI76_RS17325at 3587.002 kb on + strand, within BWI76_RS17330at 3587.251 kb on + strand, within BWI76_RS17330at 3587.444 kb on - strand, within BWI76_RS17330at 3587.501 kb on + strand, within BWI76_RS17330at 3588.428 kb on + strandat 3588.483 kb on - strandat 3588.523 kb on + strandat 3588.872 kb on - strand, within BWI76_RS17335at 3589.007 kb on - strand, within BWI76_RS17335at 3589.276 kb on - strand, within BWI76_RS17335at 3589.288 kb on + strand, within BWI76_RS17335

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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3,585,852 + BWI76_RS17320 0.68 +0.0
3,585,976 - BWI76_RS17320 0.86 -0.1
3,586,413 + BWI76_RS17325 0.48 -0.2
3,586,423 + BWI76_RS17325 0.50 +1.1
3,586,513 - BWI76_RS17325 0.62 -0.6
3,586,573 + BWI76_RS17325 0.71 +0.8
3,586,661 - BWI76_RS17325 0.83 -0.3
3,587,002 + BWI76_RS17330 0.15 +0.9
3,587,251 + BWI76_RS17330 0.31 -0.9
3,587,444 - BWI76_RS17330 0.43 -1.1
3,587,501 + BWI76_RS17330 0.47 -2.5
3,588,428 + -0.0
3,588,483 - -0.3
3,588,523 + -0.2
3,588,872 - BWI76_RS17335 0.15 -0.1
3,589,007 - BWI76_RS17335 0.19 +0.7
3,589,276 - BWI76_RS17335 0.26 -0.7
3,589,288 + BWI76_RS17335 0.26 +0.9

Or see this region's nucleotide sequence