Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30005 and AO356_30010 are separated by 0 nucleotides AO356_30010 and AO356_30015 overlap by 32 nucleotides
AO356_30005: AO356_30005 - diguanylate cyclase, at 7,002,751 to 7,003,509
_30005
AO356_30010: AO356_30010 - transcriptional regulator, at 7,003,510 to 7,004,181
_30010
AO356_30015: AO356_30015 - histidine kinase, at 7,004,150 to 7,005,229
_30015
Position (kb)
7003
7004
7005 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 7002.748 kb on + strand at 7002.748 kb on + strand at 7002.824 kb on + strand at 7002.825 kb on - strand at 7002.825 kb on - strand at 7002.920 kb on + strand, within AO356_30005 at 7002.921 kb on - strand, within AO356_30005 at 7002.974 kb on + strand, within AO356_30005 at 7002.975 kb on - strand, within AO356_30005 at 7002.975 kb on - strand, within AO356_30005 at 7002.975 kb on - strand, within AO356_30005 at 7003.083 kb on - strand, within AO356_30005 at 7003.122 kb on + strand, within AO356_30005 at 7003.188 kb on - strand, within AO356_30005 at 7003.343 kb on + strand, within AO356_30005 at 7003.343 kb on + strand, within AO356_30005 at 7003.344 kb on - strand, within AO356_30005 at 7003.511 kb on + strand at 7003.511 kb on + strand at 7003.512 kb on - strand at 7003.512 kb on - strand at 7003.659 kb on + strand, within AO356_30010 at 7003.660 kb on - strand, within AO356_30010 at 7003.742 kb on + strand, within AO356_30010 at 7003.875 kb on - strand, within AO356_30010 at 7003.875 kb on - strand, within AO356_30010 at 7004.161 kb on + strand at 7004.162 kb on - strand at 7004.228 kb on + strand at 7004.229 kb on - strand at 7004.678 kb on + strand, within AO356_30015 at 7004.678 kb on + strand, within AO356_30015 at 7004.738 kb on + strand, within AO356_30015 at 7004.738 kb on + strand, within AO356_30015 at 7004.804 kb on - strand, within AO356_30015
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 7,002,748 + -0.7 7,002,748 + -1.2 7,002,824 + +0.5 7,002,825 - +0.4 7,002,825 - +1.7 7,002,920 + AO356_30005 0.22 +0.2 7,002,921 - AO356_30005 0.22 +0.8 7,002,974 + AO356_30005 0.29 -0.2 7,002,975 - AO356_30005 0.30 -0.9 7,002,975 - AO356_30005 0.30 +0.7 7,002,975 - AO356_30005 0.30 +0.1 7,003,083 - AO356_30005 0.44 +1.0 7,003,122 + AO356_30005 0.49 -0.3 7,003,188 - AO356_30005 0.58 +0.6 7,003,343 + AO356_30005 0.78 +0.4 7,003,343 + AO356_30005 0.78 +0.5 7,003,344 - AO356_30005 0.78 +0.3 7,003,511 + +0.3 7,003,511 + -0.6 7,003,512 - +0.4 7,003,512 - +1.3 7,003,659 + AO356_30010 0.22 -1.2 7,003,660 - AO356_30010 0.22 +1.5 7,003,742 + AO356_30010 0.35 +0.7 7,003,875 - AO356_30010 0.54 +0.4 7,003,875 - AO356_30010 0.54 +0.2 7,004,161 + -0.7 7,004,162 - +0.8 7,004,228 + +0.2 7,004,229 - -2.9 7,004,678 + AO356_30015 0.49 +0.7 7,004,678 + AO356_30015 0.49 +0.5 7,004,738 + AO356_30015 0.54 +0.0 7,004,738 + AO356_30015 0.54 +0.5 7,004,804 - AO356_30015 0.61 -0.9
Or see this region's nucleotide sequence