Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25485 and AO356_25490 are separated by 207 nucleotides AO356_25490 and AO356_25495 are separated by 115 nucleotides
AO356_25485: AO356_25485 - aldehyde dehydrogenase, at 5,762,481 to 5,763,968
_25485
AO356_25490: AO356_25490 - histidine kinase, at 5,764,176 to 5,765,144
_25490
AO356_25495: AO356_25495 - hypothetical protein, at 5,765,260 to 5,766,588
_25495
Position (kb) 5764
5765
5766 Strain fitness (log2 ratio) -1
0
1 at 5763.589 kb on + strand, within AO356_25485 at 5763.592 kb on + strand, within AO356_25485 at 5763.892 kb on + strand at 5764.051 kb on + strand at 5764.052 kb on - strand at 5764.159 kb on - strand at 5764.216 kb on + strand at 5764.357 kb on + strand, within AO356_25490 at 5764.358 kb on - strand, within AO356_25490 at 5764.556 kb on + strand, within AO356_25490 at 5764.627 kb on + strand, within AO356_25490 at 5764.627 kb on + strand, within AO356_25490 at 5764.628 kb on - strand, within AO356_25490 at 5764.755 kb on + strand, within AO356_25490 at 5764.755 kb on + strand, within AO356_25490 at 5764.756 kb on - strand, within AO356_25490 at 5764.794 kb on + strand, within AO356_25490 at 5764.938 kb on + strand, within AO356_25490 at 5764.939 kb on - strand, within AO356_25490 at 5765.143 kb on - strand at 5765.143 kb on - strand at 5765.354 kb on + strand at 5765.408 kb on + strand, within AO356_25495 at 5765.561 kb on + strand, within AO356_25495 at 5765.562 kb on - strand, within AO356_25495 at 5765.562 kb on - strand, within AO356_25495 at 5765.657 kb on + strand, within AO356_25495 at 5765.810 kb on + strand, within AO356_25495 at 5765.810 kb on + strand, within AO356_25495 at 5765.810 kb on + strand, within AO356_25495 at 5765.810 kb on + strand, within AO356_25495 at 5765.811 kb on - strand, within AO356_25495 at 5765.811 kb on - strand, within AO356_25495 at 5765.811 kb on - strand, within AO356_25495 at 5765.882 kb on + strand, within AO356_25495 at 5765.882 kb on + strand, within AO356_25495 at 5765.882 kb on + strand, within AO356_25495 at 5765.882 kb on + strand, within AO356_25495 at 5765.882 kb on + strand, within AO356_25495 at 5765.883 kb on - strand, within AO356_25495 at 5765.883 kb on - strand, within AO356_25495 at 5765.883 kb on - strand, within AO356_25495 at 5765.915 kb on + strand, within AO356_25495 at 5765.916 kb on - strand, within AO356_25495 at 5766.056 kb on + strand, within AO356_25495 at 5766.057 kb on - strand, within AO356_25495
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 5,763,589 + AO356_25485 0.74 +0.2 5,763,592 + AO356_25485 0.75 +0.2 5,763,892 + +0.6 5,764,051 + -0.1 5,764,052 - +0.6 5,764,159 - +0.1 5,764,216 + +0.2 5,764,357 + AO356_25490 0.19 -0.1 5,764,358 - AO356_25490 0.19 -0.2 5,764,556 + AO356_25490 0.39 -0.1 5,764,627 + AO356_25490 0.47 -0.5 5,764,627 + AO356_25490 0.47 +1.0 5,764,628 - AO356_25490 0.47 -0.1 5,764,755 + AO356_25490 0.60 +0.7 5,764,755 + AO356_25490 0.60 +0.9 5,764,756 - AO356_25490 0.60 +0.1 5,764,794 + AO356_25490 0.64 -0.2 5,764,938 + AO356_25490 0.79 -0.2 5,764,939 - AO356_25490 0.79 +0.8 5,765,143 - -0.1 5,765,143 - +0.6 5,765,354 + +0.6 5,765,408 + AO356_25495 0.11 +0.1 5,765,561 + AO356_25495 0.23 +0.6 5,765,562 - AO356_25495 0.23 -0.2 5,765,562 - AO356_25495 0.23 +0.3 5,765,657 + AO356_25495 0.30 +0.5 5,765,810 + AO356_25495 0.41 -0.2 5,765,810 + AO356_25495 0.41 +0.5 5,765,810 + AO356_25495 0.41 +0.2 5,765,810 + AO356_25495 0.41 +0.4 5,765,811 - AO356_25495 0.41 +0.7 5,765,811 - AO356_25495 0.41 +0.5 5,765,811 - AO356_25495 0.41 +0.2 5,765,882 + AO356_25495 0.47 +0.8 5,765,882 + AO356_25495 0.47 -0.2 5,765,882 + AO356_25495 0.47 +0.9 5,765,882 + AO356_25495 0.47 -0.1 5,765,882 + AO356_25495 0.47 +0.1 5,765,883 - AO356_25495 0.47 -0.9 5,765,883 - AO356_25495 0.47 -0.3 5,765,883 - AO356_25495 0.47 +0.8 5,765,915 + AO356_25495 0.49 +1.5 5,765,916 - AO356_25495 0.49 +0.4 5,766,056 + AO356_25495 0.60 -0.5 5,766,057 - AO356_25495 0.60 +0.7
Or see this region's nucleotide sequence