Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08390

Experiment: LB 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08375 and AO356_08380 are separated by 7 nucleotidesAO356_08380 and AO356_08385 overlap by 4 nucleotidesAO356_08385 and AO356_08390 are separated by 141 nucleotidesAO356_08390 and AO356_08395 are separated by 80 nucleotides AO356_08375: AO356_08375 - acetyltransferase, at 1,882,308 to 1,882,841 _08375 AO356_08380: AO356_08380 - acetyltransferase, at 1,882,849 to 1,883,382 _08380 AO356_08385: AO356_08385 - urease subunit beta, at 1,883,379 to 1,883,684 _08385 AO356_08390: AO356_08390 - Urease (EC 3.5.1.5) (from data), at 1,883,826 to 1,885,526 _08390 AO356_08395: AO356_08395 - hypothetical protein, at 1,885,607 to 1,890,631 _08395 Position (kb) 1883 1884 1885 1886Strain fitness (log2 ratio) -1 0 1at 1883.067 kb on - strand, within AO356_08380at 1883.230 kb on + strand, within AO356_08380at 1883.285 kb on - strand, within AO356_08380at 1883.311 kb on + strand, within AO356_08380at 1883.335 kb on + strandat 1883.335 kb on + strandat 1883.336 kb on - strandat 1883.336 kb on - strandat 1883.336 kb on - strandat 1883.336 kb on - strandat 1883.353 kb on + strandat 1883.353 kb on + strandat 1883.354 kb on - strandat 1883.354 kb on - strandat 1883.354 kb on - strandat 1883.394 kb on + strandat 1883.394 kb on + strandat 1883.496 kb on + strand, within AO356_08385at 1883.497 kb on - strand, within AO356_08385at 1883.497 kb on - strand, within AO356_08385at 1883.682 kb on + strandat 1883.682 kb on + strandat 1883.682 kb on + strandat 1883.683 kb on - strandat 1883.683 kb on - strandat 1883.683 kb on - strandat 1883.689 kb on + strandat 1883.689 kb on + strandat 1883.689 kb on + strandat 1883.689 kb on + strandat 1883.690 kb on - strandat 1883.690 kb on - strandat 1883.690 kb on - strandat 1883.690 kb on - strandat 1883.737 kb on + strandat 1883.737 kb on + strandat 1883.937 kb on + strandat 1883.938 kb on - strandat 1883.938 kb on - strandat 1884.537 kb on + strand, within AO356_08390at 1884.537 kb on + strand, within AO356_08390at 1884.538 kb on - strand, within AO356_08390at 1884.538 kb on - strand, within AO356_08390at 1884.633 kb on + strand, within AO356_08390at 1884.633 kb on + strand, within AO356_08390at 1884.633 kb on + strand, within AO356_08390at 1884.633 kb on + strand, within AO356_08390at 1884.633 kb on + strand, within AO356_08390at 1884.633 kb on + strand, within AO356_08390at 1884.633 kb on + strand, within AO356_08390at 1884.634 kb on - strand, within AO356_08390at 1884.634 kb on - strand, within AO356_08390at 1884.634 kb on - strand, within AO356_08390at 1884.700 kb on + strand, within AO356_08390at 1884.700 kb on + strand, within AO356_08390at 1884.700 kb on + strand, within AO356_08390at 1884.700 kb on + strand, within AO356_08390at 1884.700 kb on + strand, within AO356_08390at 1884.701 kb on - strand, within AO356_08390at 1884.701 kb on - strand, within AO356_08390at 1884.701 kb on - strand, within AO356_08390at 1884.701 kb on - strand, within AO356_08390at 1884.701 kb on - strand, within AO356_08390at 1884.701 kb on - strand, within AO356_08390at 1884.743 kb on + strand, within AO356_08390at 1884.743 kb on + strand, within AO356_08390at 1884.743 kb on + strand, within AO356_08390at 1884.743 kb on + strand, within AO356_08390at 1884.744 kb on - strand, within AO356_08390at 1884.744 kb on - strand, within AO356_08390at 1885.030 kb on - strand, within AO356_08390at 1885.041 kb on + strand, within AO356_08390at 1885.041 kb on + strand, within AO356_08390at 1885.041 kb on + strand, within AO356_08390at 1885.041 kb on + strand, within AO356_08390at 1885.042 kb on - strand, within AO356_08390at 1885.042 kb on - strand, within AO356_08390at 1885.042 kb on - strand, within AO356_08390at 1885.410 kb on + strandat 1885.410 kb on + strandat 1885.444 kb on - strandat 1885.512 kb on + strandat 1885.512 kb on + strandat 1885.512 kb on + strandat 1885.512 kb on + strandat 1885.513 kb on - strandat 1885.513 kb on - strandat 1885.608 kb on + strandat 1885.609 kb on - strandat 1885.609 kb on - strandat 1885.719 kb on + strandat 1885.720 kb on - strandat 1885.720 kb on - strandat 1885.720 kb on - strandat 1885.720 kb on - strandat 1885.830 kb on + strandat 1885.830 kb on + strandat 1885.831 kb on - strandat 1886.007 kb on + strandat 1886.033 kb on + strandat 1886.033 kb on + strandat 1886.033 kb on + strandat 1886.034 kb on - strandat 1886.034 kb on - strandat 1886.034 kb on - strandat 1886.125 kb on + strand, within AO356_08395at 1886.125 kb on + strand, within AO356_08395at 1886.126 kb on - strand, within AO356_08395at 1886.126 kb on - strand, within AO356_08395at 1886.126 kb on - strand, within AO356_08395at 1886.126 kb on - strand, within AO356_08395at 1886.132 kb on + strand, within AO356_08395at 1886.133 kb on - strand, within AO356_08395at 1886.133 kb on - strand, within AO356_08395at 1886.133 kb on - strand, within AO356_08395at 1886.241 kb on + strand, within AO356_08395at 1886.241 kb on + strand, within AO356_08395at 1886.242 kb on - strand, within AO356_08395at 1886.242 kb on - strand, within AO356_08395at 1886.388 kb on + strand, within AO356_08395at 1886.388 kb on + strand, within AO356_08395at 1886.389 kb on - strand, within AO356_08395at 1886.389 kb on - strand, within AO356_08395at 1886.389 kb on - strand, within AO356_08395at 1886.515 kb on + strand, within AO356_08395at 1886.516 kb on - strand, within AO356_08395at 1886.516 kb on - strand, within AO356_08395

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 20C
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1,883,067 - AO356_08380 0.41 +1.3
1,883,230 + AO356_08380 0.71 -0.5
1,883,285 - AO356_08380 0.82 +0.5
1,883,311 + AO356_08380 0.87 +0.3
1,883,335 + -1.2
1,883,335 + +0.1
1,883,336 - +0.1
1,883,336 - -0.1
1,883,336 - -0.1
1,883,336 - -0.2
1,883,353 + +0.8
1,883,353 + +0.5
1,883,354 - -1.0
1,883,354 - +0.1
1,883,354 - -1.2
1,883,394 + -0.6
1,883,394 + -0.1
1,883,496 + AO356_08385 0.38 -0.3
1,883,497 - AO356_08385 0.39 -0.4
1,883,497 - AO356_08385 0.39 +1.5
1,883,682 + -0.5
1,883,682 + -0.4
1,883,682 + +0.2
1,883,683 - +0.2
1,883,683 - +0.4
1,883,683 - +0.5
1,883,689 + -0.2
1,883,689 + -0.5
1,883,689 + +0.4
1,883,689 + +0.4
1,883,690 - +0.9
1,883,690 - -0.5
1,883,690 - -0.9
1,883,690 - +0.1
1,883,737 + -1.2
1,883,737 + -0.1
1,883,937 + +0.0
1,883,938 - +0.9
1,883,938 - -0.3
1,884,537 + AO356_08390 0.42 +1.1
1,884,537 + AO356_08390 0.42 -0.1
1,884,538 - AO356_08390 0.42 -0.2
1,884,538 - AO356_08390 0.42 -0.7
1,884,633 + AO356_08390 0.47 +0.4
1,884,633 + AO356_08390 0.47 +0.4
1,884,633 + AO356_08390 0.47 +0.5
1,884,633 + AO356_08390 0.47 +0.3
1,884,633 + AO356_08390 0.47 -0.2
1,884,633 + AO356_08390 0.47 -0.4
1,884,633 + AO356_08390 0.47 +0.6
1,884,634 - AO356_08390 0.48 -0.6
1,884,634 - AO356_08390 0.48 -0.3
1,884,634 - AO356_08390 0.48 +0.5
1,884,700 + AO356_08390 0.51 +0.2
1,884,700 + AO356_08390 0.51 -0.3
1,884,700 + AO356_08390 0.51 -0.0
1,884,700 + AO356_08390 0.51 +0.2
1,884,700 + AO356_08390 0.51 +0.8
1,884,701 - AO356_08390 0.51 +1.0
1,884,701 - AO356_08390 0.51 +0.0
1,884,701 - AO356_08390 0.51 +0.4
1,884,701 - AO356_08390 0.51 +0.7
1,884,701 - AO356_08390 0.51 +0.2
1,884,701 - AO356_08390 0.51 -0.6
1,884,743 + AO356_08390 0.54 +0.3
1,884,743 + AO356_08390 0.54 +0.4
1,884,743 + AO356_08390 0.54 -0.0
1,884,743 + AO356_08390 0.54 +0.6
1,884,744 - AO356_08390 0.54 +0.1
1,884,744 - AO356_08390 0.54 -0.2
1,885,030 - AO356_08390 0.71 -0.3
1,885,041 + AO356_08390 0.71 +1.0
1,885,041 + AO356_08390 0.71 +0.2
1,885,041 + AO356_08390 0.71 +0.5
1,885,041 + AO356_08390 0.71 -0.6
1,885,042 - AO356_08390 0.71 +0.1
1,885,042 - AO356_08390 0.71 -0.1
1,885,042 - AO356_08390 0.71 +0.1
1,885,410 + -0.7
1,885,410 + +0.1
1,885,444 - -0.6
1,885,512 + -0.8
1,885,512 + +0.5
1,885,512 + +0.4
1,885,512 + -0.4
1,885,513 - +1.5
1,885,513 - -0.7
1,885,608 + -0.1
1,885,609 - +0.7
1,885,609 - +0.7
1,885,719 + -0.5
1,885,720 - +1.5
1,885,720 - +0.5
1,885,720 - +0.2
1,885,720 - +0.1
1,885,830 + +0.8
1,885,830 + -0.1
1,885,831 - -0.2
1,886,007 + +0.3
1,886,033 + +0.2
1,886,033 + -0.6
1,886,033 + +0.3
1,886,034 - -0.4
1,886,034 - +0.2
1,886,034 - -0.3
1,886,125 + AO356_08395 0.10 +0.1
1,886,125 + AO356_08395 0.10 -0.0
1,886,126 - AO356_08395 0.10 -0.6
1,886,126 - AO356_08395 0.10 -0.4
1,886,126 - AO356_08395 0.10 -0.4
1,886,126 - AO356_08395 0.10 -0.2
1,886,132 + AO356_08395 0.10 -0.4
1,886,133 - AO356_08395 0.10 +0.8
1,886,133 - AO356_08395 0.10 +0.4
1,886,133 - AO356_08395 0.10 +0.0
1,886,241 + AO356_08395 0.13 +0.1
1,886,241 + AO356_08395 0.13 -0.7
1,886,242 - AO356_08395 0.13 +0.1
1,886,242 - AO356_08395 0.13 -0.4
1,886,388 + AO356_08395 0.16 +0.1
1,886,388 + AO356_08395 0.16 +0.5
1,886,389 - AO356_08395 0.16 -0.4
1,886,389 - AO356_08395 0.16 +0.5
1,886,389 - AO356_08395 0.16 -0.4
1,886,515 + AO356_08395 0.18 +0.4
1,886,516 - AO356_08395 0.18 -0.2
1,886,516 - AO356_08395 0.18 +0.4

Or see this region's nucleotide sequence