Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27920

Experiment: 4C survival; 672 hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_27915 and AO353_27920 are separated by 31 nucleotidesAO353_27920 and AO353_27925 are separated by 153 nucleotides AO353_27915: AO353_27915 - arginine N-succinyltransferase, at 6,090,413 to 6,091,429 _27915 AO353_27920: AO353_27920 - arginine N-succinyltransferase, at 6,091,461 to 6,092,495 _27920 AO353_27925: AO353_27925 - hypothetical protein, at 6,092,649 to 6,092,981 _27925 Position (kb) 6091 6092 6093Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 6090.587 kb on + strand, within AO353_27915at 6090.587 kb on + strand, within AO353_27915at 6090.587 kb on + strand, within AO353_27915at 6090.587 kb on + strand, within AO353_27915at 6090.587 kb on + strand, within AO353_27915at 6090.588 kb on - strand, within AO353_27915at 6090.588 kb on - strand, within AO353_27915at 6090.588 kb on - strand, within AO353_27915at 6090.674 kb on + strand, within AO353_27915at 6090.674 kb on + strand, within AO353_27915at 6090.675 kb on - strand, within AO353_27915at 6090.772 kb on + strand, within AO353_27915at 6090.911 kb on + strand, within AO353_27915at 6090.912 kb on - strand, within AO353_27915at 6090.978 kb on - strand, within AO353_27915at 6090.978 kb on - strand, within AO353_27915at 6091.052 kb on + strand, within AO353_27915at 6091.052 kb on + strand, within AO353_27915at 6091.052 kb on + strand, within AO353_27915at 6091.052 kb on + strand, within AO353_27915at 6091.052 kb on + strand, within AO353_27915at 6091.052 kb on + strand, within AO353_27915at 6091.052 kb on + strand, within AO353_27915at 6091.053 kb on - strand, within AO353_27915at 6091.053 kb on - strand, within AO353_27915at 6091.053 kb on - strand, within AO353_27915at 6091.053 kb on - strand, within AO353_27915at 6091.053 kb on - strand, within AO353_27915at 6091.160 kb on + strand, within AO353_27915at 6091.160 kb on + strand, within AO353_27915at 6091.161 kb on - strand, within AO353_27915at 6091.161 kb on - strand, within AO353_27915at 6091.161 kb on - strand, within AO353_27915at 6091.161 kb on - strand, within AO353_27915at 6091.161 kb on - strand, within AO353_27915at 6091.310 kb on + strand, within AO353_27915at 6091.425 kb on + strandat 6091.713 kb on + strand, within AO353_27920at 6091.713 kb on + strand, within AO353_27920at 6091.714 kb on - strand, within AO353_27920at 6091.714 kb on - strand, within AO353_27920at 6091.719 kb on + strand, within AO353_27920at 6092.091 kb on + strand, within AO353_27920at 6092.091 kb on + strand, within AO353_27920at 6092.091 kb on + strand, within AO353_27920at 6092.091 kb on + strand, within AO353_27920at 6092.091 kb on + strand, within AO353_27920at 6092.092 kb on - strand, within AO353_27920at 6092.092 kb on - strand, within AO353_27920at 6092.092 kb on - strand, within AO353_27920at 6092.092 kb on - strand, within AO353_27920at 6092.199 kb on + strand, within AO353_27920at 6092.199 kb on + strand, within AO353_27920at 6092.200 kb on - strand, within AO353_27920at 6092.200 kb on - strand, within AO353_27920at 6092.200 kb on - strand, within AO353_27920at 6092.200 kb on - strand, within AO353_27920at 6092.200 kb on - strand, within AO353_27920at 6092.593 kb on + strandat 6092.594 kb on - strandat 6092.594 kb on - strandat 6092.594 kb on - strandat 6092.650 kb on + strandat 6092.650 kb on + strandat 6092.650 kb on + strandat 6092.650 kb on + strandat 6092.650 kb on + strandat 6092.650 kb on + strandat 6092.650 kb on + strandat 6092.650 kb on + strandat 6092.651 kb on - strandat 6092.651 kb on - strandat 6092.651 kb on - strandat 6092.651 kb on - strandat 6092.655 kb on - strandat 6092.655 kb on - strandat 6092.655 kb on - strandat 6092.655 kb on - strandat 6092.920 kb on + strand, within AO353_27925at 6092.920 kb on + strand, within AO353_27925at 6092.921 kb on - strand, within AO353_27925at 6092.921 kb on - strand, within AO353_27925at 6092.953 kb on + strandat 6092.953 kb on + strandat 6092.954 kb on - strandat 6092.954 kb on - strandat 6092.954 kb on - strandat 6092.954 kb on - strandat 6092.954 kb on - strandat 6092.954 kb on - strandat 6092.954 kb on - strandat 6092.954 kb on - strandat 6092.971 kb on + strandat 6092.971 kb on + strandat 6092.971 kb on + strandat 6092.971 kb on + strandat 6092.971 kb on + strandat 6092.971 kb on + strandat 6092.971 kb on + strandat 6092.971 kb on + strandat 6092.971 kb on + strandat 6092.971 kb on + strandat 6092.971 kb on + strandat 6092.972 kb on - strandat 6092.972 kb on - strandat 6092.972 kb on - strandat 6092.972 kb on - strandat 6092.972 kb on - strandat 6092.972 kb on - strandat 6092.972 kb on - strandat 6092.972 kb on - strandat 6093.000 kb on - strandat 6093.000 kb on - strandat 6093.000 kb on - strandat 6093.035 kb on + strandat 6093.035 kb on + strandat 6093.035 kb on + strandat 6093.035 kb on + strandat 6093.036 kb on - strandat 6093.036 kb on - strandat 6093.036 kb on - strandat 6093.036 kb on - strandat 6093.048 kb on + strandat 6093.048 kb on + strandat 6093.117 kb on + strandat 6093.117 kb on + strandat 6093.117 kb on + strandat 6093.118 kb on - strandat 6093.172 kb on - strandat 6093.172 kb on - strandat 6093.223 kb on - strandat 6093.340 kb on + strandat 6093.340 kb on + strandat 6093.340 kb on + strandat 6093.341 kb on - strandat 6093.341 kb on - strandat 6093.368 kb on + strandat 6093.369 kb on - strandat 6093.369 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
remove
6,090,587 + AO353_27915 0.17 -2.0
6,090,587 + AO353_27915 0.17 +0.1
6,090,587 + AO353_27915 0.17 -1.7
6,090,587 + AO353_27915 0.17 -3.2
6,090,587 + AO353_27915 0.17 -2.6
6,090,588 - AO353_27915 0.17 +0.0
6,090,588 - AO353_27915 0.17 -1.1
6,090,588 - AO353_27915 0.17 -0.6
6,090,674 + AO353_27915 0.26 -0.2
6,090,674 + AO353_27915 0.26 -1.2
6,090,675 - AO353_27915 0.26 -2.6
6,090,772 + AO353_27915 0.35 -0.6
6,090,911 + AO353_27915 0.49 -0.3
6,090,912 - AO353_27915 0.49 -2.9
6,090,978 - AO353_27915 0.56 +0.8
6,090,978 - AO353_27915 0.56 -0.7
6,091,052 + AO353_27915 0.63 -0.8
6,091,052 + AO353_27915 0.63 +0.1
6,091,052 + AO353_27915 0.63 -0.9
6,091,052 + AO353_27915 0.63 -1.0
6,091,052 + AO353_27915 0.63 -1.0
6,091,052 + AO353_27915 0.63 +0.2
6,091,052 + AO353_27915 0.63 -0.3
6,091,053 - AO353_27915 0.63 +0.2
6,091,053 - AO353_27915 0.63 -1.3
6,091,053 - AO353_27915 0.63 +0.0
6,091,053 - AO353_27915 0.63 -2.0
6,091,053 - AO353_27915 0.63 -1.6
6,091,160 + AO353_27915 0.73 -1.2
6,091,160 + AO353_27915 0.73 -1.7
6,091,161 - AO353_27915 0.74 -2.1
6,091,161 - AO353_27915 0.74 +0.0
6,091,161 - AO353_27915 0.74 -0.8
6,091,161 - AO353_27915 0.74 -2.4
6,091,161 - AO353_27915 0.74 +0.0
6,091,310 + AO353_27915 0.88 -0.3
6,091,425 + +4.8
6,091,713 + AO353_27920 0.24 -1.0
6,091,713 + AO353_27920 0.24 -2.4
6,091,714 - AO353_27920 0.24 -2.5
6,091,714 - AO353_27920 0.24 -1.2
6,091,719 + AO353_27920 0.25 -2.6
6,092,091 + AO353_27920 0.61 -1.0
6,092,091 + AO353_27920 0.61 -1.4
6,092,091 + AO353_27920 0.61 -0.2
6,092,091 + AO353_27920 0.61 -0.3
6,092,091 + AO353_27920 0.61 -2.4
6,092,092 - AO353_27920 0.61 -2.4
6,092,092 - AO353_27920 0.61 -2.5
6,092,092 - AO353_27920 0.61 +2.0
6,092,092 - AO353_27920 0.61 -2.2
6,092,199 + AO353_27920 0.71 -1.0
6,092,199 + AO353_27920 0.71 +0.3
6,092,200 - AO353_27920 0.71 -0.7
6,092,200 - AO353_27920 0.71 -1.3
6,092,200 - AO353_27920 0.71 -2.0
6,092,200 - AO353_27920 0.71 +0.0
6,092,200 - AO353_27920 0.71 -1.4
6,092,593 + +0.5
6,092,594 - -0.7
6,092,594 - -0.4
6,092,594 - +0.1
6,092,650 + -0.8
6,092,650 + -0.6
6,092,650 + -0.8
6,092,650 + +1.3
6,092,650 + +0.2
6,092,650 + +0.3
6,092,650 + -1.7
6,092,650 + -0.6
6,092,651 - -0.7
6,092,651 - +2.0
6,092,651 - -0.8
6,092,651 - +1.0
6,092,655 - +0.9
6,092,655 - +0.9
6,092,655 - +0.0
6,092,655 - +1.0
6,092,920 + AO353_27925 0.81 -1.0
6,092,920 + AO353_27925 0.81 -0.2
6,092,921 - AO353_27925 0.82 +0.3
6,092,921 - AO353_27925 0.82 +0.4
6,092,953 + -1.6
6,092,953 + -1.8
6,092,954 - -1.6
6,092,954 - +0.6
6,092,954 - -1.3
6,092,954 - -1.9
6,092,954 - +0.8
6,092,954 - +0.1
6,092,954 - -0.2
6,092,954 - -1.0
6,092,971 + +0.5
6,092,971 + +0.7
6,092,971 + +0.2
6,092,971 + -0.4
6,092,971 + -0.6
6,092,971 + +0.4
6,092,971 + +0.4
6,092,971 + +1.0
6,092,971 + -0.6
6,092,971 + +0.0
6,092,971 + -0.7
6,092,972 - -0.4
6,092,972 - -0.6
6,092,972 - +0.8
6,092,972 - +0.0
6,092,972 - +0.4
6,092,972 - +0.3
6,092,972 - -1.6
6,092,972 - -0.9
6,093,000 - +0.4
6,093,000 - -0.6
6,093,000 - +0.4
6,093,035 + +0.0
6,093,035 + +0.1
6,093,035 + -1.2
6,093,035 + +0.7
6,093,036 - +0.6
6,093,036 - +0.4
6,093,036 - +0.4
6,093,036 - +1.0
6,093,048 + +0.1
6,093,048 + +1.3
6,093,117 + -1.4
6,093,117 + -1.2
6,093,117 + +0.6
6,093,118 - -2.0
6,093,172 - +1.0
6,093,172 - -0.9
6,093,223 - -0.1
6,093,340 + +2.4
6,093,340 + -1.0
6,093,340 + +0.8
6,093,341 - +0.8
6,093,341 - -0.7
6,093,368 + +0.3
6,093,369 - +0.6
6,093,369 - -0.5

Or see this region's nucleotide sequence