Experiment: 4C survival; 672 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27210 and AO353_27215 are separated by 413 nucleotides AO353_27215 and AO353_27220 are separated by 261 nucleotides AO353_27220 and AO353_27225 are separated by 221 nucleotides AO353_27225 and AO353_27230 are separated by 172 nucleotides
AO353_27210: AO353_27210 - hypothetical protein, at 5,951,601 to 5,952,761
_27210
AO353_27215: AO353_27215 - hypothetical protein, at 5,953,175 to 5,953,390
_27215
AO353_27220: AO353_27220 - hypothetical protein, at 5,953,652 to 5,954,614
_27220
AO353_27225: AO353_27225 - hypothetical protein, at 5,954,836 to 5,955,075
_27225
AO353_27230: AO353_27230 - pyocin, at 5,955,248 to 5,956,453
_27230
Position (kb)
5953
5954
5955 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 5952.674 kb on + strand at 5952.725 kb on + strand at 5952.726 kb on - strand at 5952.755 kb on + strand at 5952.755 kb on + strand at 5952.755 kb on + strand at 5952.755 kb on + strand at 5952.761 kb on + strand at 5952.761 kb on + strand at 5952.761 kb on + strand at 5952.761 kb on + strand at 5952.762 kb on - strand at 5952.762 kb on - strand at 5952.811 kb on + strand at 5952.811 kb on + strand at 5952.812 kb on - strand at 5952.812 kb on - strand at 5952.812 kb on - strand at 5952.812 kb on - strand at 5952.812 kb on - strand at 5952.814 kb on + strand at 5952.814 kb on + strand at 5952.814 kb on + strand at 5952.814 kb on + strand at 5952.814 kb on + strand at 5952.815 kb on - strand at 5952.815 kb on - strand at 5952.815 kb on - strand at 5952.815 kb on - strand at 5952.815 kb on - strand at 5952.815 kb on - strand at 5952.818 kb on + strand at 5952.818 kb on + strand at 5952.818 kb on + strand at 5952.819 kb on - strand at 5952.819 kb on - strand at 5952.819 kb on - strand at 5952.819 kb on - strand at 5952.819 kb on - strand at 5952.825 kb on + strand at 5952.851 kb on + strand at 5952.851 kb on + strand at 5952.851 kb on + strand at 5952.851 kb on + strand at 5952.851 kb on + strand at 5952.851 kb on + strand at 5952.960 kb on - strand at 5953.030 kb on + strand at 5953.089 kb on - strand at 5953.098 kb on + strand at 5953.113 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.187 kb on + strand at 5953.203 kb on + strand, within AO353_27215 at 5953.204 kb on - strand, within AO353_27215 at 5953.204 kb on - strand, within AO353_27215 at 5953.217 kb on + strand, within AO353_27215 at 5953.217 kb on + strand, within AO353_27215 at 5953.217 kb on + strand, within AO353_27215 at 5953.218 kb on - strand, within AO353_27215 at 5953.491 kb on + strand at 5953.492 kb on - strand at 5953.506 kb on + strand at 5953.561 kb on + strand at 5953.608 kb on - strand at 5953.608 kb on - strand at 5953.630 kb on - strand at 5953.757 kb on - strand, within AO353_27220 at 5953.763 kb on - strand, within AO353_27220 at 5953.815 kb on - strand, within AO353_27220 at 5953.863 kb on + strand, within AO353_27220 at 5953.864 kb on - strand, within AO353_27220 at 5953.977 kb on + strand, within AO353_27220 at 5954.014 kb on + strand, within AO353_27220 at 5954.164 kb on + strand, within AO353_27220 at 5954.320 kb on - strand, within AO353_27220 at 5954.320 kb on - strand, within AO353_27220 at 5954.617 kb on - strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.826 kb on - strand at 5954.826 kb on - strand at 5954.859 kb on + strand at 5955.179 kb on + strand at 5955.179 kb on + strand at 5955.179 kb on + strand at 5955.179 kb on + strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.212 kb on - strand at 5955.257 kb on + strand at 5955.258 kb on - strand at 5955.289 kb on + strand at 5955.289 kb on + strand at 5955.289 kb on + strand at 5955.290 kb on - strand at 5955.292 kb on + strand at 5955.292 kb on + strand at 5955.293 kb on - strand at 5955.306 kb on - strand at 5955.307 kb on - strand at 5955.307 kb on - strand at 5955.319 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.345 kb on - strand at 5955.562 kb on + strand, within AO353_27230
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 672 hrs remove 5,952,674 + +0.6 5,952,725 + +0.4 5,952,726 - -1.8 5,952,755 + +1.0 5,952,755 + +0.0 5,952,755 + +0.1 5,952,755 + -1.5 5,952,761 + -0.1 5,952,761 + +0.6 5,952,761 + -0.6 5,952,761 + -1.3 5,952,762 - -1.1 5,952,762 - +2.0 5,952,811 + -1.5 5,952,811 + +1.4 5,952,812 - +0.7 5,952,812 - -2.1 5,952,812 - -2.9 5,952,812 - -1.2 5,952,812 - -1.5 5,952,814 + +0.9 5,952,814 + +1.1 5,952,814 + -1.0 5,952,814 + -0.8 5,952,814 + -1.2 5,952,815 - -1.5 5,952,815 - +1.3 5,952,815 - -2.2 5,952,815 - -1.1 5,952,815 - -0.3 5,952,815 - -2.6 5,952,818 + -0.5 5,952,818 + -1.4 5,952,818 + -1.5 5,952,819 - +0.2 5,952,819 - -2.0 5,952,819 - +0.2 5,952,819 - -3.0 5,952,819 - -0.6 5,952,825 + -0.6 5,952,851 + +1.7 5,952,851 + +3.6 5,952,851 + -1.0 5,952,851 + +1.3 5,952,851 + +0.6 5,952,851 + +0.5 5,952,960 - -1.2 5,953,030 + +2.2 5,953,089 - +1.3 5,953,098 + -1.0 5,953,113 + -0.4 5,953,140 + +1.2 5,953,140 + -0.9 5,953,140 + +0.6 5,953,140 + +1.7 5,953,140 + +0.0 5,953,140 + -1.2 5,953,140 + -0.5 5,953,140 + -2.3 5,953,140 + +0.6 5,953,140 + +1.4 5,953,140 + +0.6 5,953,140 + -0.2 5,953,141 - -1.0 5,953,141 - +0.8 5,953,141 - +1.1 5,953,141 - +0.1 5,953,141 - +0.4 5,953,141 - +0.8 5,953,141 - -2.9 5,953,141 - +0.9 5,953,141 - +1.7 5,953,141 - -0.8 5,953,141 - +1.0 5,953,141 - +0.4 5,953,141 - +0.4 5,953,141 - +5.4 5,953,187 + +0.4 5,953,203 + AO353_27215 0.13 -0.8 5,953,204 - AO353_27215 0.13 +0.3 5,953,204 - AO353_27215 0.13 -1.6 5,953,217 + AO353_27215 0.19 +1.2 5,953,217 + AO353_27215 0.19 -1.5 5,953,217 + AO353_27215 0.19 +0.8 5,953,218 - AO353_27215 0.20 +1.7 5,953,491 + -0.6 5,953,492 - -0.6 5,953,506 + -0.5 5,953,561 + +0.2 5,953,608 - +0.4 5,953,608 - +0.2 5,953,630 - -0.3 5,953,757 - AO353_27220 0.11 -0.8 5,953,763 - AO353_27220 0.12 +1.2 5,953,815 - AO353_27220 0.17 -0.1 5,953,863 + AO353_27220 0.22 -1.3 5,953,864 - AO353_27220 0.22 -0.3 5,953,977 + AO353_27220 0.34 -1.2 5,954,014 + AO353_27220 0.38 -1.9 5,954,164 + AO353_27220 0.53 -0.7 5,954,320 - AO353_27220 0.69 -0.9 5,954,320 - AO353_27220 0.69 -1.5 5,954,617 - -0.8 5,954,825 + +0.2 5,954,825 + +1.8 5,954,825 + -1.2 5,954,825 + -1.1 5,954,825 + +0.2 5,954,826 - +0.9 5,954,826 - -1.2 5,954,859 + +0.7 5,955,179 + +0.2 5,955,179 + -0.6 5,955,179 + -0.5 5,955,179 + -0.6 5,955,180 - +0.9 5,955,180 - +3.2 5,955,180 - +0.6 5,955,180 - -1.6 5,955,180 - +0.7 5,955,180 - -0.8 5,955,180 - +1.0 5,955,212 - -1.5 5,955,257 + -0.6 5,955,258 - +0.2 5,955,289 + -1.1 5,955,289 + -0.8 5,955,289 + +0.2 5,955,290 - +0.8 5,955,292 + -0.9 5,955,292 + -0.4 5,955,293 - +0.4 5,955,306 - +1.6 5,955,307 - +1.5 5,955,307 - -1.3 5,955,319 + -2.1 5,955,344 + +0.7 5,955,344 + -1.5 5,955,344 + -2.7 5,955,344 + -0.1 5,955,344 + -0.2 5,955,344 + +1.7 5,955,345 - +0.4 5,955,562 + AO353_27230 0.26 -2.4
Or see this region's nucleotide sequence