Experiment: 4C survival; 672 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27005 and AO353_27010 overlap by 11 nucleotides AO353_27010 and AO353_27015 are separated by 89 nucleotides AO353_27015 and AO353_27020 overlap by 46 nucleotides AO353_27020 and AO353_27025 are separated by 185 nucleotides
AO353_27005: AO353_27005 - proline hydroxylase, at 5,918,537 to 5,919,253
_27005
AO353_27010: AO353_27010 - alpha-ketoglutarate-dependent dioxygenase, at 5,919,243 to 5,919,920
_27010
AO353_27015: AO353_27015 - 6-O-methylguanine DNA methyltransferase, at 5,920,010 to 5,921,113
_27015
AO353_27020: AO353_27020 - transcriptional regulator, at 5,921,068 to 5,921,526
_27020
AO353_27025: AO353_27025 - 2-nitropropane dioxygenase, at 5,921,712 to 5,922,776
_27025
Position (kb) 5920
5921
5922 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5919.220 kb on + strand at 5919.251 kb on + strand at 5919.400 kb on + strand, within AO353_27010 at 5919.400 kb on + strand, within AO353_27010 at 5919.400 kb on + strand, within AO353_27010 at 5919.401 kb on - strand, within AO353_27010 at 5919.455 kb on - strand, within AO353_27010 at 5919.455 kb on - strand, within AO353_27010 at 5919.511 kb on - strand, within AO353_27010 at 5919.511 kb on - strand, within AO353_27010 at 5919.694 kb on - strand, within AO353_27010 at 5919.981 kb on + strand at 5919.987 kb on + strand at 5919.987 kb on + strand at 5919.987 kb on + strand at 5919.988 kb on - strand at 5919.988 kb on - strand at 5919.988 kb on - strand at 5919.988 kb on - strand at 5919.997 kb on - strand at 5919.997 kb on - strand at 5919.997 kb on - strand at 5920.097 kb on + strand at 5920.098 kb on - strand at 5920.098 kb on - strand at 5920.121 kb on + strand, within AO353_27015 at 5920.121 kb on + strand, within AO353_27015 at 5920.121 kb on + strand, within AO353_27015 at 5920.121 kb on + strand, within AO353_27015 at 5920.122 kb on - strand, within AO353_27015 at 5920.122 kb on - strand, within AO353_27015 at 5920.122 kb on - strand, within AO353_27015 at 5920.122 kb on - strand, within AO353_27015 at 5920.406 kb on + strand, within AO353_27015 at 5920.407 kb on - strand, within AO353_27015 at 5920.407 kb on - strand, within AO353_27015 at 5920.478 kb on + strand, within AO353_27015 at 5920.478 kb on + strand, within AO353_27015 at 5920.479 kb on - strand, within AO353_27015 at 5920.479 kb on - strand, within AO353_27015 at 5920.479 kb on - strand, within AO353_27015 at 5920.511 kb on + strand, within AO353_27015 at 5920.511 kb on + strand, within AO353_27015 at 5920.511 kb on + strand, within AO353_27015 at 5920.512 kb on - strand, within AO353_27015 at 5920.512 kb on - strand, within AO353_27015 at 5920.858 kb on + strand, within AO353_27015 at 5921.062 kb on + strand at 5921.063 kb on - strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.111 kb on + strand at 5921.111 kb on + strand at 5921.111 kb on + strand at 5921.111 kb on + strand at 5921.112 kb on - strand at 5921.234 kb on + strand, within AO353_27020 at 5921.320 kb on + strand, within AO353_27020 at 5921.320 kb on + strand, within AO353_27020 at 5921.321 kb on - strand, within AO353_27020 at 5921.321 kb on - strand at 5921.321 kb on - strand, within AO353_27020 at 5921.333 kb on + strand, within AO353_27020 at 5921.333 kb on + strand, within AO353_27020 at 5921.334 kb on - strand, within AO353_27020 at 5921.342 kb on + strand, within AO353_27020 at 5921.343 kb on - strand, within AO353_27020 at 5921.343 kb on - strand, within AO353_27020 at 5921.343 kb on - strand, within AO353_27020 at 5921.374 kb on - strand, within AO353_27020 at 5921.463 kb on + strand, within AO353_27020 at 5921.463 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.470 kb on - strand, within AO353_27020 at 5921.470 kb on - strand, within AO353_27020 at 5921.470 kb on - strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.488 kb on + strand at 5921.489 kb on - strand at 5921.612 kb on + strand at 5921.612 kb on + strand at 5921.613 kb on - strand at 5921.613 kb on - strand at 5921.643 kb on - strand at 5921.676 kb on + strand at 5921.676 kb on + strand at 5921.677 kb on - strand at 5921.677 kb on - strand at 5921.677 kb on - strand at 5921.696 kb on + strand at 5921.696 kb on + strand at 5922.000 kb on + strand at 5922.000 kb on + strand, within AO353_27025 at 5922.000 kb on + strand, within AO353_27025
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 672 hrs remove 5,919,220 + -0.5 5,919,251 + +1.7 5,919,400 + AO353_27010 0.23 +1.0 5,919,400 + AO353_27010 0.23 +1.0 5,919,400 + AO353_27010 0.23 -0.4 5,919,401 - AO353_27010 0.23 -1.7 5,919,455 - AO353_27010 0.31 +0.2 5,919,455 - AO353_27010 0.31 -1.2 5,919,511 - AO353_27010 0.40 +0.7 5,919,511 - AO353_27010 0.40 +2.4 5,919,694 - AO353_27010 0.67 -1.6 5,919,981 + -0.1 5,919,987 + -0.6 5,919,987 + +1.0 5,919,987 + -1.6 5,919,988 - +0.6 5,919,988 - -1.1 5,919,988 - -0.2 5,919,988 - -0.3 5,919,997 - -0.2 5,919,997 - -0.1 5,919,997 - -0.1 5,920,097 + -0.5 5,920,098 - -2.0 5,920,098 - +0.0 5,920,121 + AO353_27015 0.10 -0.9 5,920,121 + AO353_27015 0.10 -0.6 5,920,121 + AO353_27015 0.10 +0.7 5,920,121 + AO353_27015 0.10 -1.7 5,920,122 - AO353_27015 0.10 +0.1 5,920,122 - AO353_27015 0.10 -1.7 5,920,122 - AO353_27015 0.10 +0.0 5,920,122 - AO353_27015 0.10 -1.6 5,920,406 + AO353_27015 0.36 -0.3 5,920,407 - AO353_27015 0.36 -0.2 5,920,407 - AO353_27015 0.36 -1.0 5,920,478 + AO353_27015 0.42 -0.8 5,920,478 + AO353_27015 0.42 -0.3 5,920,479 - AO353_27015 0.42 -1.2 5,920,479 - AO353_27015 0.42 +0.4 5,920,479 - AO353_27015 0.42 -0.9 5,920,511 + AO353_27015 0.45 +1.3 5,920,511 + AO353_27015 0.45 -0.3 5,920,511 + AO353_27015 0.45 -0.8 5,920,512 - AO353_27015 0.45 -2.4 5,920,512 - AO353_27015 0.45 +0.6 5,920,858 + AO353_27015 0.77 -0.9 5,921,062 + -1.2 5,921,063 - -1.2 5,921,084 + +0.3 5,921,084 + -1.2 5,921,084 + +0.6 5,921,084 + -0.1 5,921,084 + +0.8 5,921,084 + +0.0 5,921,084 + -0.3 5,921,084 + +0.2 5,921,085 - +0.0 5,921,085 - +0.3 5,921,085 - -1.5 5,921,085 - +0.3 5,921,085 - +0.6 5,921,085 - +2.6 5,921,085 - +1.6 5,921,085 - +0.3 5,921,085 - -1.9 5,921,085 - -0.5 5,921,085 - -0.3 5,921,085 - +0.7 5,921,085 - -0.5 5,921,085 - +2.0 5,921,085 - +0.6 5,921,085 - -0.3 5,921,085 - +0.0 5,921,111 + +0.4 5,921,111 + +1.4 5,921,111 + -0.3 5,921,111 + +0.7 5,921,112 - +0.7 5,921,234 + AO353_27020 0.36 -0.3 5,921,320 + AO353_27020 0.55 -0.3 5,921,320 + AO353_27020 0.55 -0.6 5,921,321 - AO353_27020 0.55 +1.0 5,921,321 - -0.3 5,921,321 - AO353_27020 0.55 -0.4 5,921,333 + AO353_27020 0.58 -1.0 5,921,333 + AO353_27020 0.58 +0.0 5,921,334 - AO353_27020 0.58 +0.7 5,921,342 + AO353_27020 0.60 -2.7 5,921,343 - AO353_27020 0.60 -0.2 5,921,343 - AO353_27020 0.60 -0.3 5,921,343 - AO353_27020 0.60 -0.9 5,921,374 - AO353_27020 0.67 -0.9 5,921,463 + AO353_27020 0.86 -0.5 5,921,463 + AO353_27020 0.86 -0.7 5,921,469 + AO353_27020 0.87 +1.4 5,921,469 + AO353_27020 0.87 -2.0 5,921,469 + AO353_27020 0.87 +0.3 5,921,469 + AO353_27020 0.87 -0.5 5,921,469 + AO353_27020 0.87 -0.2 5,921,469 + AO353_27020 0.87 +0.4 5,921,469 + AO353_27020 0.87 +0.5 5,921,469 + AO353_27020 0.87 +0.4 5,921,470 - AO353_27020 0.88 +0.1 5,921,470 - AO353_27020 0.88 +0.1 5,921,470 - AO353_27020 0.88 -2.5 5,921,473 + AO353_27020 0.88 +0.1 5,921,473 + AO353_27020 0.88 +1.7 5,921,473 + AO353_27020 0.88 -0.3 5,921,473 + AO353_27020 0.88 -0.2 5,921,473 + AO353_27020 0.88 -2.2 5,921,473 + AO353_27020 0.88 +1.2 5,921,473 + AO353_27020 0.88 -0.5 5,921,474 - AO353_27020 0.88 -0.1 5,921,474 - AO353_27020 0.88 +0.4 5,921,474 - AO353_27020 0.88 -0.6 5,921,474 - AO353_27020 0.88 +0.6 5,921,474 - AO353_27020 0.88 +0.7 5,921,474 - AO353_27020 0.88 -1.2 5,921,488 + -0.8 5,921,489 - -0.9 5,921,612 + -0.5 5,921,612 + +0.0 5,921,613 - +1.2 5,921,613 - -0.5 5,921,643 - -2.2 5,921,676 + +0.7 5,921,676 + +0.3 5,921,677 - +0.9 5,921,677 - +0.0 5,921,677 - -0.8 5,921,696 + -0.7 5,921,696 + +0.2 5,922,000 + -0.3 5,922,000 + AO353_27025 0.27 -1.3 5,922,000 + AO353_27025 0.27 +0.7
Or see this region's nucleotide sequence