Experiment: 4C survival; 672 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26935 and AO353_26940 are separated by 132 nucleotides AO353_26940 and AO353_26945 are separated by 246 nucleotides AO353_26945 and AO353_26950 are separated by 197 nucleotides
AO353_26935: AO353_26935 - LysR family transcriptional regulator, at 5,906,461 to 5,907,333
_26935
AO353_26940: AO353_26940 - diguanylate phosphodiesterase, at 5,907,466 to 5,909,001
_26940
AO353_26945: AO353_26945 - transcriptional regulator, at 5,909,248 to 5,909,610
_26945
AO353_26950: AO353_26950 - hypothetical protein, at 5,909,808 to 5,910,344
_26950
Position (kb) 5907
5908
5909
5910 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 5906.801 kb on - strand, within AO353_26935 at 5906.813 kb on - strand, within AO353_26935 at 5906.970 kb on + strand, within AO353_26935 at 5907.225 kb on + strand, within AO353_26935 at 5907.225 kb on + strand, within AO353_26935 at 5907.300 kb on + strand at 5907.301 kb on - strand at 5907.314 kb on + strand at 5907.314 kb on + strand at 5907.314 kb on + strand at 5907.350 kb on - strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.425 kb on - strand at 5907.425 kb on - strand at 5907.442 kb on - strand at 5907.542 kb on + strand at 5907.542 kb on + strand at 5907.542 kb on + strand at 5907.542 kb on + strand at 5907.542 kb on + strand at 5907.542 kb on + strand at 5907.543 kb on - strand at 5907.543 kb on - strand at 5907.545 kb on + strand at 5907.545 kb on + strand at 5907.546 kb on - strand at 5907.546 kb on - strand at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.797 kb on + strand, within AO353_26940 at 5907.797 kb on + strand, within AO353_26940 at 5907.797 kb on + strand, within AO353_26940 at 5907.797 kb on + strand, within AO353_26940 at 5907.798 kb on - strand, within AO353_26940 at 5907.798 kb on - strand, within AO353_26940 at 5907.808 kb on + strand, within AO353_26940 at 5907.809 kb on - strand, within AO353_26940 at 5907.809 kb on - strand, within AO353_26940 at 5907.836 kb on - strand, within AO353_26940 at 5907.901 kb on + strand, within AO353_26940 at 5907.901 kb on + strand, within AO353_26940 at 5907.992 kb on + strand, within AO353_26940 at 5907.992 kb on + strand, within AO353_26940 at 5907.992 kb on + strand, within AO353_26940 at 5907.992 kb on + strand, within AO353_26940 at 5907.993 kb on - strand, within AO353_26940 at 5907.998 kb on + strand, within AO353_26940 at 5907.999 kb on - strand, within AO353_26940 at 5907.999 kb on - strand, within AO353_26940 at 5908.022 kb on + strand, within AO353_26940 at 5908.023 kb on - strand, within AO353_26940 at 5908.023 kb on - strand, within AO353_26940 at 5908.026 kb on + strand, within AO353_26940 at 5908.026 kb on + strand, within AO353_26940 at 5908.062 kb on - strand, within AO353_26940 at 5908.100 kb on - strand, within AO353_26940 at 5908.112 kb on + strand, within AO353_26940 at 5908.112 kb on + strand, within AO353_26940 at 5908.112 kb on + strand, within AO353_26940 at 5908.147 kb on + strand, within AO353_26940 at 5908.147 kb on + strand, within AO353_26940 at 5908.148 kb on - strand, within AO353_26940 at 5908.226 kb on + strand, within AO353_26940 at 5908.294 kb on + strand, within AO353_26940 at 5908.294 kb on + strand, within AO353_26940 at 5908.294 kb on + strand, within AO353_26940 at 5908.295 kb on - strand, within AO353_26940 at 5908.295 kb on - strand, within AO353_26940 at 5908.295 kb on - strand, within AO353_26940 at 5908.295 kb on - strand, within AO353_26940 at 5908.295 kb on - strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.728 kb on + strand, within AO353_26940 at 5908.729 kb on - strand, within AO353_26940 at 5908.738 kb on + strand, within AO353_26940 at 5908.738 kb on + strand, within AO353_26940 at 5908.772 kb on + strand, within AO353_26940 at 5908.772 kb on + strand, within AO353_26940 at 5908.773 kb on - strand, within AO353_26940 at 5908.906 kb on + strand at 5908.906 kb on + strand at 5908.906 kb on + strand at 5908.907 kb on - strand at 5908.943 kb on - strand at 5908.946 kb on + strand at 5908.946 kb on + strand at 5908.947 kb on - strand at 5908.999 kb on + strand at 5909.000 kb on - strand at 5909.000 kb on - strand at 5909.000 kb on - strand at 5909.003 kb on + strand at 5909.003 kb on + strand at 5909.081 kb on - strand at 5909.121 kb on + strand at 5909.121 kb on + strand at 5909.122 kb on - strand at 5909.124 kb on + strand at 5909.179 kb on + strand at 5909.180 kb on - strand at 5909.180 kb on - strand at 5909.195 kb on + strand at 5909.195 kb on + strand at 5909.195 kb on + strand at 5909.196 kb on - strand at 5909.197 kb on + strand at 5909.198 kb on - strand at 5909.198 kb on - strand at 5909.233 kb on - strand at 5909.241 kb on - strand at 5909.246 kb on + strand at 5909.246 kb on + strand at 5909.246 kb on + strand at 5909.247 kb on - strand at 5909.386 kb on + strand, within AO353_26945 at 5909.387 kb on - strand, within AO353_26945 at 5909.494 kb on + strand, within AO353_26945 at 5909.572 kb on + strand, within AO353_26945 at 5909.572 kb on + strand, within AO353_26945 at 5909.573 kb on - strand, within AO353_26945 at 5909.608 kb on + strand at 5909.608 kb on + strand at 5909.608 kb on + strand at 5909.609 kb on - strand at 5909.609 kb on - strand at 5909.657 kb on - strand at 5909.657 kb on - strand at 5909.666 kb on + strand at 5909.667 kb on - strand at 5909.667 kb on - strand at 5909.667 kb on - strand at 5909.667 kb on - strand at 5909.669 kb on - strand at 5909.669 kb on - strand at 5909.669 kb on - strand at 5909.669 kb on - strand at 5909.672 kb on + strand at 5909.672 kb on + strand at 5909.673 kb on - strand at 5909.673 kb on - strand at 5909.716 kb on + strand at 5909.717 kb on - strand at 5909.746 kb on + strand at 5909.747 kb on - strand at 5909.806 kb on + strand at 5909.806 kb on + strand at 5909.807 kb on - strand at 5909.807 kb on - strand at 5909.809 kb on + strand at 5909.810 kb on - strand at 5909.810 kb on - strand at 5909.810 kb on - strand at 5909.839 kb on - strand at 5909.860 kb on + strand at 5909.861 kb on - strand at 5909.882 kb on - strand, within AO353_26950 at 5909.893 kb on + strand, within AO353_26950 at 5909.894 kb on - strand, within AO353_26950 at 5909.894 kb on - strand, within AO353_26950 at 5909.894 kb on - strand, within AO353_26950 at 5909.910 kb on + strand, within AO353_26950 at 5909.910 kb on + strand, within AO353_26950 at 5909.964 kb on - strand, within AO353_26950 at 5909.999 kb on + strand, within AO353_26950 at 5910.000 kb on - strand, within AO353_26950 at 5910.000 kb on - strand, within AO353_26950
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 672 hrs remove 5,906,801 - AO353_26935 0.39 -0.0 5,906,813 - AO353_26935 0.40 +1.4 5,906,970 + AO353_26935 0.58 -0.1 5,907,225 + AO353_26935 0.88 -1.7 5,907,225 + AO353_26935 0.88 +0.1 5,907,300 + -1.7 5,907,301 - +0.4 5,907,314 + -0.3 5,907,314 + -1.6 5,907,314 + -1.0 5,907,350 - -0.8 5,907,358 + +0.2 5,907,358 + +0.3 5,907,358 + -0.5 5,907,358 + -2.0 5,907,358 + -1.8 5,907,358 + -0.3 5,907,358 + -0.2 5,907,358 + -1.0 5,907,358 + -1.7 5,907,358 + -1.9 5,907,358 + -1.3 5,907,358 + +1.0 5,907,359 - -0.0 5,907,359 - -2.9 5,907,359 - +0.7 5,907,359 - -0.7 5,907,359 - -0.0 5,907,359 - -0.7 5,907,359 - -0.8 5,907,359 - -0.3 5,907,359 - -1.6 5,907,359 - -1.9 5,907,359 - -0.5 5,907,359 - +0.1 5,907,359 - -0.8 5,907,425 - +1.2 5,907,425 - -2.3 5,907,442 - -0.9 5,907,542 + +0.2 5,907,542 + -0.5 5,907,542 + -2.3 5,907,542 + +0.5 5,907,542 + +0.2 5,907,542 + +0.5 5,907,543 - -0.5 5,907,543 - +0.3 5,907,545 + +2.4 5,907,545 + -0.2 5,907,546 - -0.3 5,907,546 - -0.3 5,907,782 + AO353_26940 0.21 -0.0 5,907,782 + AO353_26940 0.21 +0.7 5,907,782 + AO353_26940 0.21 -1.7 5,907,782 + AO353_26940 0.21 +0.3 5,907,782 + AO353_26940 0.21 -0.7 5,907,782 + AO353_26940 0.21 -1.2 5,907,782 + AO353_26940 0.21 +0.8 5,907,782 + AO353_26940 0.21 -1.3 5,907,782 + AO353_26940 0.21 +1.0 5,907,782 + AO353_26940 0.21 -1.7 5,907,782 + AO353_26940 0.21 -0.3 5,907,782 + AO353_26940 0.21 -0.2 5,907,782 + AO353_26940 0.21 -2.1 5,907,782 + AO353_26940 0.21 -0.0 5,907,783 - AO353_26940 0.21 -0.6 5,907,783 - AO353_26940 0.21 +2.0 5,907,783 - AO353_26940 0.21 -1.1 5,907,783 - AO353_26940 0.21 -0.1 5,907,783 - AO353_26940 0.21 +1.4 5,907,783 - AO353_26940 0.21 -1.7 5,907,783 - AO353_26940 0.21 -0.9 5,907,783 - AO353_26940 0.21 +0.7 5,907,783 - AO353_26940 0.21 -0.1 5,907,783 - AO353_26940 0.21 -0.6 5,907,783 - AO353_26940 0.21 -0.6 5,907,783 - AO353_26940 0.21 +1.4 5,907,783 - AO353_26940 0.21 -0.1 5,907,783 - AO353_26940 0.21 -0.0 5,907,783 - AO353_26940 0.21 +0.7 5,907,783 - AO353_26940 0.21 -1.3 5,907,783 - AO353_26940 0.21 +0.7 5,907,783 - AO353_26940 0.21 -0.0 5,907,783 - AO353_26940 0.21 +1.4 5,907,783 - AO353_26940 0.21 +0.1 5,907,783 - AO353_26940 0.21 -1.3 5,907,783 - -0.3 5,907,783 - AO353_26940 0.21 -1.5 5,907,783 - AO353_26940 0.21 +0.1 5,907,784 + AO353_26940 0.21 -0.3 5,907,784 + AO353_26940 0.21 +1.6 5,907,784 + AO353_26940 0.21 -1.0 5,907,784 + AO353_26940 0.21 -0.9 5,907,784 + AO353_26940 0.21 +0.3 5,907,784 + AO353_26940 0.21 -0.6 5,907,784 + AO353_26940 0.21 -0.3 5,907,784 + AO353_26940 0.21 +0.2 5,907,785 - AO353_26940 0.21 +0.1 5,907,785 - AO353_26940 0.21 +0.2 5,907,785 - AO353_26940 0.21 -0.3 5,907,785 - AO353_26940 0.21 -0.3 5,907,785 - AO353_26940 0.21 -1.6 5,907,785 - AO353_26940 0.21 +0.2 5,907,785 - AO353_26940 0.21 -0.9 5,907,785 - AO353_26940 0.21 -0.6 5,907,785 - AO353_26940 0.21 -1.7 5,907,785 - AO353_26940 0.21 +2.0 5,907,785 - AO353_26940 0.21 +2.1 5,907,785 - AO353_26940 0.21 +3.2 5,907,785 - AO353_26940 0.21 -1.5 5,907,785 - AO353_26940 0.21 -0.0 5,907,785 - AO353_26940 0.21 -1.5 5,907,785 - AO353_26940 0.21 -0.1 5,907,785 - AO353_26940 0.21 -2.2 5,907,785 - AO353_26940 0.21 +0.4 5,907,797 + AO353_26940 0.22 -0.1 5,907,797 + AO353_26940 0.22 +0.4 5,907,797 + AO353_26940 0.22 -1.4 5,907,797 + AO353_26940 0.22 -0.4 5,907,798 - AO353_26940 0.22 +7.1 5,907,798 - AO353_26940 0.22 -0.5 5,907,808 + AO353_26940 0.22 +1.6 5,907,809 - AO353_26940 0.22 -2.6 5,907,809 - AO353_26940 0.22 -1.3 5,907,836 - AO353_26940 0.24 -0.1 5,907,901 + AO353_26940 0.28 +0.7 5,907,901 + AO353_26940 0.28 +1.2 5,907,992 + AO353_26940 0.34 +0.2 5,907,992 + AO353_26940 0.34 -0.0 5,907,992 + AO353_26940 0.34 -0.1 5,907,992 + AO353_26940 0.34 -1.0 5,907,993 - AO353_26940 0.34 +1.0 5,907,998 + AO353_26940 0.35 +0.2 5,907,999 - AO353_26940 0.35 -0.8 5,907,999 - AO353_26940 0.35 -1.2 5,908,022 + AO353_26940 0.36 -0.6 5,908,023 - AO353_26940 0.36 -1.6 5,908,023 - AO353_26940 0.36 +0.6 5,908,026 + AO353_26940 0.36 +0.4 5,908,026 + AO353_26940 0.36 -0.4 5,908,062 - AO353_26940 0.39 +1.7 5,908,100 - AO353_26940 0.41 -0.8 5,908,112 + AO353_26940 0.42 -1.0 5,908,112 + AO353_26940 0.42 +0.3 5,908,112 + AO353_26940 0.42 +1.0 5,908,147 + AO353_26940 0.44 -0.0 5,908,147 + AO353_26940 0.44 +0.6 5,908,148 - AO353_26940 0.44 -1.2 5,908,226 + AO353_26940 0.49 -0.6 5,908,294 + AO353_26940 0.54 +2.4 5,908,294 + AO353_26940 0.54 +0.4 5,908,294 + AO353_26940 0.54 +2.0 5,908,295 - AO353_26940 0.54 -0.8 5,908,295 - AO353_26940 0.54 -2.7 5,908,295 - AO353_26940 0.54 +1.0 5,908,295 - AO353_26940 0.54 +1.0 5,908,295 - AO353_26940 0.54 -0.2 5,908,676 + AO353_26940 0.79 -1.2 5,908,676 + AO353_26940 0.79 +0.0 5,908,676 + AO353_26940 0.79 -1.4 5,908,676 + AO353_26940 0.79 -0.8 5,908,676 + AO353_26940 0.79 +1.0 5,908,676 + AO353_26940 0.79 +0.1 5,908,676 + AO353_26940 0.79 +0.6 5,908,677 - AO353_26940 0.79 -0.6 5,908,677 - AO353_26940 0.79 +2.0 5,908,677 - AO353_26940 0.79 -1.4 5,908,677 - AO353_26940 0.79 +0.2 5,908,677 - AO353_26940 0.79 +3.0 5,908,677 - AO353_26940 0.79 -0.4 5,908,677 - AO353_26940 0.79 +0.5 5,908,728 + AO353_26940 0.82 -1.0 5,908,729 - AO353_26940 0.82 -0.7 5,908,738 + AO353_26940 0.83 -0.6 5,908,738 + AO353_26940 0.83 +1.7 5,908,772 + AO353_26940 0.85 -0.6 5,908,772 + AO353_26940 0.85 +0.4 5,908,773 - AO353_26940 0.85 -0.0 5,908,906 + +0.7 5,908,906 + +0.1 5,908,906 + -1.5 5,908,907 - +1.0 5,908,943 - -0.2 5,908,946 + +0.7 5,908,946 + +1.4 5,908,947 - -0.1 5,908,999 + +0.8 5,909,000 - +0.3 5,909,000 - -0.4 5,909,000 - +1.6 5,909,003 + -1.2 5,909,003 + -0.4 5,909,081 - +0.5 5,909,121 + -0.3 5,909,121 + +1.1 5,909,122 - +2.6 5,909,124 + +0.5 5,909,179 + +0.8 5,909,180 - -1.0 5,909,180 - +0.4 5,909,195 + +0.4 5,909,195 + -0.3 5,909,195 + -0.8 5,909,196 - +0.4 5,909,197 + +2.2 5,909,198 - +0.6 5,909,198 - -1.3 5,909,233 - +0.8 5,909,241 - -1.1 5,909,246 + +1.2 5,909,246 + -1.8 5,909,246 + -1.9 5,909,247 - -0.6 5,909,386 + AO353_26945 0.38 -0.0 5,909,387 - AO353_26945 0.38 +0.5 5,909,494 + AO353_26945 0.68 +1.2 5,909,572 + AO353_26945 0.89 -1.2 5,909,572 + AO353_26945 0.89 +0.4 5,909,573 - AO353_26945 0.90 +0.3 5,909,608 + -1.2 5,909,608 + +1.0 5,909,608 + -0.6 5,909,609 - -0.6 5,909,609 - -0.6 5,909,657 - +0.3 5,909,657 - -0.3 5,909,666 + +0.2 5,909,667 - +0.6 5,909,667 - +1.1 5,909,667 - +0.8 5,909,667 - -0.5 5,909,669 - -0.5 5,909,669 - +1.3 5,909,669 - +0.3 5,909,669 - +0.9 5,909,672 + +0.2 5,909,672 + -0.1 5,909,673 - -0.5 5,909,673 - -0.5 5,909,716 + -1.2 5,909,717 - -0.8 5,909,746 + +0.8 5,909,747 - +0.3 5,909,806 + +0.8 5,909,806 + -1.1 5,909,807 - -0.2 5,909,807 - -0.8 5,909,809 + -0.3 5,909,810 - -0.7 5,909,810 - +1.4 5,909,810 - -0.0 5,909,839 - +0.7 5,909,860 + -0.1 5,909,861 - -1.3 5,909,882 - AO353_26950 0.14 +2.0 5,909,893 + AO353_26950 0.16 -0.9 5,909,894 - AO353_26950 0.16 +0.5 5,909,894 - AO353_26950 0.16 +0.3 5,909,894 - AO353_26950 0.16 +0.5 5,909,910 + AO353_26950 0.19 +0.4 5,909,910 + AO353_26950 0.19 +0.4 5,909,964 - AO353_26950 0.29 -1.0 5,909,999 + AO353_26950 0.36 +0.8 5,910,000 - AO353_26950 0.36 +2.2 5,910,000 - AO353_26950 0.36 +0.8
Or see this region's nucleotide sequence