Experiment: 4C survival; 672 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25280 and AO353_25285 are separated by 151 nucleotides AO353_25285 and AO353_25290 overlap by 4 nucleotides AO353_25290 and AO353_25295 are separated by 3 nucleotides
AO353_25280: AO353_25280 - gamma-glutamyltransferase, at 5,576,496 to 5,578,106
_25280
AO353_25285: AO353_25285 - transglutaminase, at 5,578,258 to 5,579,055
_25285
AO353_25290: AO353_25290 - hypothetical protein, at 5,579,052 to 5,580,002
_25290
AO353_25295: AO353_25295 - hypothetical protein, at 5,580,006 to 5,581,415
_25295
Position (kb) 5578
5579
5580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5577.331 kb on + strand, within AO353_25280 at 5577.331 kb on + strand, within AO353_25280 at 5577.384 kb on + strand, within AO353_25280 at 5577.385 kb on - strand, within AO353_25280 at 5577.385 kb on - strand, within AO353_25280 at 5577.517 kb on + strand, within AO353_25280 at 5577.518 kb on - strand, within AO353_25280 at 5577.518 kb on - strand, within AO353_25280 at 5577.518 kb on - strand, within AO353_25280 at 5577.576 kb on - strand, within AO353_25280 at 5578.076 kb on - strand at 5578.081 kb on + strand at 5578.082 kb on - strand at 5578.123 kb on + strand at 5578.228 kb on - strand at 5578.228 kb on - strand at 5578.259 kb on + strand at 5578.260 kb on - strand at 5578.260 kb on - strand at 5578.362 kb on - strand, within AO353_25285 at 5578.430 kb on + strand, within AO353_25285 at 5578.514 kb on + strand, within AO353_25285 at 5578.514 kb on + strand, within AO353_25285 at 5578.564 kb on - strand, within AO353_25285 at 5578.564 kb on - strand, within AO353_25285 at 5578.626 kb on + strand, within AO353_25285 at 5578.641 kb on - strand, within AO353_25285 at 5578.641 kb on - strand, within AO353_25285 at 5578.832 kb on + strand, within AO353_25285 at 5578.832 kb on + strand, within AO353_25285 at 5578.833 kb on - strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.877 kb on - strand, within AO353_25285 at 5578.916 kb on - strand, within AO353_25285 at 5578.916 kb on - strand, within AO353_25285 at 5579.019 kb on - strand at 5579.024 kb on + strand at 5579.024 kb on + strand at 5579.024 kb on + strand at 5579.024 kb on + strand at 5579.025 kb on - strand at 5579.025 kb on - strand at 5579.056 kb on - strand at 5579.068 kb on + strand at 5579.398 kb on + strand, within AO353_25290 at 5579.401 kb on + strand, within AO353_25290 at 5579.446 kb on + strand, within AO353_25290 at 5579.525 kb on - strand, within AO353_25290 at 5579.615 kb on - strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.747 kb on + strand, within AO353_25290 at 5579.747 kb on + strand, within AO353_25290 at 5579.748 kb on - strand, within AO353_25290 at 5579.748 kb on - strand, within AO353_25290 at 5579.824 kb on + strand, within AO353_25290 at 5579.825 kb on - strand, within AO353_25290 at 5579.825 kb on - strand, within AO353_25290 at 5579.915 kb on - strand at 5579.975 kb on - strand at 5580.007 kb on + strand at 5580.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 672 hrs remove 5,577,331 + AO353_25280 0.52 +0.0 5,577,331 + AO353_25280 0.52 -0.7 5,577,384 + AO353_25280 0.55 -1.5 5,577,385 - AO353_25280 0.55 -1.0 5,577,385 - AO353_25280 0.55 -0.7 5,577,517 + AO353_25280 0.63 -1.0 5,577,518 - AO353_25280 0.63 +0.4 5,577,518 - AO353_25280 0.63 -0.3 5,577,518 - AO353_25280 0.63 -2.8 5,577,576 - AO353_25280 0.67 -1.0 5,578,076 - +0.5 5,578,081 + +1.1 5,578,082 - -1.6 5,578,123 + -1.3 5,578,228 - +1.0 5,578,228 - +0.4 5,578,259 + +0.7 5,578,260 - -0.7 5,578,260 - -0.2 5,578,362 - AO353_25285 0.13 +2.8 5,578,430 + AO353_25285 0.22 +0.3 5,578,514 + AO353_25285 0.32 -0.5 5,578,514 + AO353_25285 0.32 -0.5 5,578,564 - AO353_25285 0.38 -0.3 5,578,564 - AO353_25285 0.38 -0.1 5,578,626 + AO353_25285 0.46 -0.5 5,578,641 - AO353_25285 0.48 +0.8 5,578,641 - AO353_25285 0.48 +0.0 5,578,832 + AO353_25285 0.72 -1.0 5,578,832 + AO353_25285 0.72 -0.2 5,578,833 - AO353_25285 0.72 +0.3 5,578,876 + AO353_25285 0.77 +0.7 5,578,876 + AO353_25285 0.77 +0.8 5,578,876 + AO353_25285 0.77 -0.2 5,578,876 + AO353_25285 0.77 -1.6 5,578,876 + AO353_25285 0.77 -0.7 5,578,876 + AO353_25285 0.77 -0.8 5,578,876 + AO353_25285 0.77 -0.2 5,578,876 + AO353_25285 0.77 +0.5 5,578,877 - AO353_25285 0.78 -0.3 5,578,916 - AO353_25285 0.82 -2.2 5,578,916 - AO353_25285 0.82 -0.2 5,579,019 - -1.2 5,579,024 + -0.4 5,579,024 + -1.2 5,579,024 + -0.0 5,579,024 + -1.5 5,579,025 - -0.5 5,579,025 - -1.0 5,579,056 - -0.4 5,579,068 + +0.8 5,579,398 + AO353_25290 0.36 +0.7 5,579,401 + AO353_25290 0.37 -1.0 5,579,446 + AO353_25290 0.41 +0.1 5,579,525 - AO353_25290 0.50 +0.0 5,579,615 - AO353_25290 0.59 +1.1 5,579,743 + AO353_25290 0.73 +0.8 5,579,743 + AO353_25290 0.73 -0.6 5,579,743 + AO353_25290 0.73 +0.9 5,579,743 + AO353_25290 0.73 -0.2 5,579,743 + AO353_25290 0.73 -1.1 5,579,743 + AO353_25290 0.73 +0.0 5,579,743 + AO353_25290 0.73 -0.2 5,579,743 + AO353_25290 0.73 +1.1 5,579,744 - AO353_25290 0.73 +0.9 5,579,744 - AO353_25290 0.73 -0.2 5,579,744 - AO353_25290 0.73 -1.5 5,579,744 - AO353_25290 0.73 +0.4 5,579,744 - AO353_25290 0.73 +1.0 5,579,744 - AO353_25290 0.73 -2.0 5,579,747 + AO353_25290 0.73 +2.3 5,579,747 + AO353_25290 0.73 -2.5 5,579,748 - AO353_25290 0.73 -0.2 5,579,748 - AO353_25290 0.73 +0.8 5,579,824 + AO353_25290 0.81 +0.8 5,579,825 - AO353_25290 0.81 +0.4 5,579,825 - AO353_25290 0.81 -1.0 5,579,915 - -1.2 5,579,975 - +1.0 5,580,007 + -1.3 5,580,008 - +0.4
Or see this region's nucleotide sequence