Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24655

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24650 and AO353_24655 are separated by 101 nucleotidesAO353_24655 and AO353_24660 are separated by 149 nucleotides AO353_24650: AO353_24650 - hypothetical protein, at 5,424,388 to 5,426,157 _24650 AO353_24655: AO353_24655 - hypothetical protein, at 5,426,259 to 5,427,557 _24655 AO353_24660: AO353_24660 - GntR family transcriptional regulator, at 5,427,707 to 5,428,948 _24660 Position (kb) 5426 5427 5428Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5425.534 kb on + strand, within AO353_24650at 5425.542 kb on + strand, within AO353_24650at 5425.586 kb on + strand, within AO353_24650at 5425.591 kb on - strand, within AO353_24650at 5425.607 kb on + strand, within AO353_24650at 5425.623 kb on - strand, within AO353_24650at 5425.651 kb on - strand, within AO353_24650at 5426.159 kb on - strandat 5426.287 kb on + strandat 5426.381 kb on + strandat 5426.385 kb on + strandat 5426.386 kb on - strandat 5426.466 kb on + strand, within AO353_24655at 5426.467 kb on - strand, within AO353_24655at 5426.467 kb on - strand, within AO353_24655at 5426.467 kb on - strand, within AO353_24655at 5426.532 kb on + strand, within AO353_24655at 5426.698 kb on + strand, within AO353_24655at 5426.818 kb on + strand, within AO353_24655at 5426.818 kb on + strand, within AO353_24655at 5426.818 kb on + strand, within AO353_24655at 5426.819 kb on - strand, within AO353_24655at 5426.819 kb on - strand, within AO353_24655at 5426.819 kb on - strand, within AO353_24655at 5426.857 kb on + strand, within AO353_24655at 5426.916 kb on + strand, within AO353_24655at 5427.030 kb on + strand, within AO353_24655at 5427.177 kb on + strand, within AO353_24655at 5427.382 kb on + strand, within AO353_24655at 5427.419 kb on + strand, within AO353_24655at 5427.423 kb on - strand, within AO353_24655at 5427.423 kb on - strand, within AO353_24655at 5427.423 kb on - strand, within AO353_24655at 5427.429 kb on - strandat 5427.469 kb on + strandat 5427.535 kb on + strandat 5427.617 kb on + strandat 5427.643 kb on + strandat 5427.644 kb on - strandat 5427.644 kb on - strandat 5427.693 kb on + strandat 5427.693 kb on + strandat 5427.693 kb on + strandat 5427.693 kb on + strandat 5427.784 kb on + strandat 5427.784 kb on + strandat 5427.785 kb on - strandat 5427.785 kb on - strandat 5427.824 kb on + strandat 5427.824 kb on + strandat 5427.824 kb on + strandat 5427.824 kb on + strandat 5427.824 kb on + strandat 5427.824 kb on + strandat 5427.825 kb on - strandat 5427.825 kb on - strandat 5427.825 kb on - strandat 5427.984 kb on + strand, within AO353_24660at 5427.984 kb on + strand, within AO353_24660at 5427.985 kb on - strand, within AO353_24660at 5427.985 kb on - strand, within AO353_24660at 5427.985 kb on - strand, within AO353_24660at 5427.985 kb on - strand, within AO353_24660at 5427.988 kb on + strand, within AO353_24660at 5427.988 kb on + strand, within AO353_24660at 5427.988 kb on + strand, within AO353_24660at 5427.989 kb on - strand, within AO353_24660at 5427.989 kb on - strand, within AO353_24660at 5427.989 kb on - strand, within AO353_24660at 5427.989 kb on - strand, within AO353_24660at 5428.007 kb on + strand, within AO353_24660at 5428.007 kb on + strand, within AO353_24660at 5428.007 kb on + strand, within AO353_24660at 5428.008 kb on - strand, within AO353_24660at 5428.008 kb on - strand, within AO353_24660at 5428.009 kb on + strand, within AO353_24660at 5428.010 kb on - strand, within AO353_24660at 5428.010 kb on - strand, within AO353_24660at 5428.010 kb on - strand, within AO353_24660at 5428.010 kb on - strand, within AO353_24660at 5428.049 kb on + strand, within AO353_24660at 5428.049 kb on + strand, within AO353_24660at 5428.049 kb on + strand, within AO353_24660at 5428.049 kb on + strand, within AO353_24660at 5428.049 kb on + strand, within AO353_24660at 5428.049 kb on + strand, within AO353_24660at 5428.049 kb on + strand, within AO353_24660at 5428.049 kb on + strandat 5428.049 kb on + strand, within AO353_24660at 5428.049 kb on + strand, within AO353_24660at 5428.049 kb on + strand, within AO353_24660at 5428.049 kb on + strand, within AO353_24660at 5428.049 kb on + strand, within AO353_24660at 5428.050 kb on - strand, within AO353_24660at 5428.050 kb on - strand, within AO353_24660at 5428.050 kb on - strand, within AO353_24660at 5428.050 kb on - strand, within AO353_24660at 5428.050 kb on - strand, within AO353_24660at 5428.050 kb on - strand, within AO353_24660at 5428.083 kb on + strand, within AO353_24660at 5428.084 kb on - strand, within AO353_24660at 5428.084 kb on - strand, within AO353_24660at 5428.382 kb on + strand, within AO353_24660at 5428.383 kb on - strand, within AO353_24660at 5428.494 kb on - strand, within AO353_24660at 5428.499 kb on + strand, within AO353_24660at 5428.500 kb on - strand, within AO353_24660

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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5,425,534 + AO353_24650 0.65 -1.2
5,425,542 + AO353_24650 0.65 -1.1
5,425,586 + AO353_24650 0.68 +0.2
5,425,591 - AO353_24650 0.68 -0.7
5,425,607 + AO353_24650 0.69 -2.6
5,425,623 - AO353_24650 0.70 -0.4
5,425,651 - AO353_24650 0.71 -1.7
5,426,159 - +0.6
5,426,287 + -2.4
5,426,381 + +0.2
5,426,385 + -0.5
5,426,386 - -0.7
5,426,466 + AO353_24655 0.16 -1.3
5,426,467 - AO353_24655 0.16 -1.9
5,426,467 - AO353_24655 0.16 -0.6
5,426,467 - AO353_24655 0.16 -2.8
5,426,532 + AO353_24655 0.21 +0.2
5,426,698 + AO353_24655 0.34 -1.7
5,426,818 + AO353_24655 0.43 -0.3
5,426,818 + AO353_24655 0.43 +0.5
5,426,818 + AO353_24655 0.43 -1.6
5,426,819 - AO353_24655 0.43 -2.2
5,426,819 - AO353_24655 0.43 -0.7
5,426,819 - AO353_24655 0.43 +1.1
5,426,857 + AO353_24655 0.46 +0.9
5,426,916 + AO353_24655 0.51 -1.4
5,427,030 + AO353_24655 0.59 +0.2
5,427,177 + AO353_24655 0.71 -0.9
5,427,382 + AO353_24655 0.86 -0.4
5,427,419 + AO353_24655 0.89 -0.7
5,427,423 - AO353_24655 0.90 -0.6
5,427,423 - AO353_24655 0.90 -0.7
5,427,423 - AO353_24655 0.90 -1.5
5,427,429 - -0.9
5,427,469 + -0.7
5,427,535 + -1.4
5,427,617 + -2.3
5,427,643 + -0.3
5,427,644 - -0.4
5,427,644 - -1.7
5,427,693 + +0.6
5,427,693 + -1.7
5,427,693 + +0.4
5,427,693 + -3.5
5,427,784 + +0.5
5,427,784 + -0.7
5,427,785 - -0.8
5,427,785 - +0.1
5,427,824 + +2.9
5,427,824 + +0.3
5,427,824 + -0.9
5,427,824 + -0.9
5,427,824 + +0.1
5,427,824 + +0.3
5,427,825 - +0.1
5,427,825 - -2.0
5,427,825 - -1.1
5,427,984 + AO353_24660 0.22 +0.6
5,427,984 + AO353_24660 0.22 -0.2
5,427,985 - AO353_24660 0.22 +0.8
5,427,985 - AO353_24660 0.22 +0.0
5,427,985 - AO353_24660 0.22 -0.6
5,427,985 - AO353_24660 0.22 -0.4
5,427,988 + AO353_24660 0.23 -0.9
5,427,988 + AO353_24660 0.23 -0.2
5,427,988 + AO353_24660 0.23 +0.8
5,427,989 - AO353_24660 0.23 -0.6
5,427,989 - AO353_24660 0.23 -0.1
5,427,989 - AO353_24660 0.23 -0.6
5,427,989 - AO353_24660 0.23 +0.2
5,428,007 + AO353_24660 0.24 +1.9
5,428,007 + AO353_24660 0.24 -0.9
5,428,007 + AO353_24660 0.24 +0.2
5,428,008 - AO353_24660 0.24 -0.7
5,428,008 - AO353_24660 0.24 -1.3
5,428,009 + AO353_24660 0.24 -1.1
5,428,010 - AO353_24660 0.24 +0.9
5,428,010 - AO353_24660 0.24 +0.6
5,428,010 - AO353_24660 0.24 -1.4
5,428,010 - AO353_24660 0.24 -1.7
5,428,049 + AO353_24660 0.28 -0.1
5,428,049 + AO353_24660 0.28 +0.3
5,428,049 + AO353_24660 0.28 -1.9
5,428,049 + AO353_24660 0.28 -0.1
5,428,049 + AO353_24660 0.28 -1.3
5,428,049 + AO353_24660 0.28 -1.6
5,428,049 + AO353_24660 0.28 -0.0
5,428,049 + +1.9
5,428,049 + AO353_24660 0.28 -2.6
5,428,049 + AO353_24660 0.28 -1.3
5,428,049 + AO353_24660 0.28 -0.5
5,428,049 + AO353_24660 0.28 +0.1
5,428,049 + AO353_24660 0.28 -0.3
5,428,050 - AO353_24660 0.28 +1.2
5,428,050 - AO353_24660 0.28 -0.9
5,428,050 - AO353_24660 0.28 +1.7
5,428,050 - AO353_24660 0.28 +1.2
5,428,050 - AO353_24660 0.28 +1.4
5,428,050 - AO353_24660 0.28 +0.7
5,428,083 + AO353_24660 0.30 +1.9
5,428,084 - AO353_24660 0.30 -0.2
5,428,084 - AO353_24660 0.30 -2.3
5,428,382 + AO353_24660 0.54 -1.7
5,428,383 - AO353_24660 0.54 -1.3
5,428,494 - AO353_24660 0.63 -0.1
5,428,499 + AO353_24660 0.64 +0.4
5,428,500 - AO353_24660 0.64 -0.1

Or see this region's nucleotide sequence