Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24045

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24035 and AO353_24040 overlap by 4 nucleotidesAO353_24040 and AO353_24045 overlap by 4 nucleotidesAO353_24045 and AO353_24050 overlap by 4 nucleotides AO353_24035: AO353_24035 - iron ABC transporter permease, at 5,286,876 to 5,287,766 _24035 AO353_24040: AO353_24040 - iron ABC transporter permease, at 5,287,763 to 5,288,713 _24040 AO353_24045: AO353_24045 - iron ABC transporter ATP-binding protein, at 5,288,710 to 5,289,492 _24045 AO353_24050: AO353_24050 - ferric anguibactin-binding protein, at 5,289,489 to 5,290,472 _24050 Position (kb) 5288 5289 5290Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5287.732 kb on + strandat 5287.759 kb on - strandat 5287.759 kb on - strandat 5287.759 kb on - strandat 5287.856 kb on + strandat 5287.856 kb on + strandat 5287.857 kb on - strandat 5287.857 kb on - strandat 5287.857 kb on - strandat 5287.857 kb on - strandat 5287.919 kb on + strand, within AO353_24040at 5287.919 kb on + strand, within AO353_24040at 5287.919 kb on + strand, within AO353_24040at 5287.919 kb on + strandat 5287.959 kb on + strand, within AO353_24040at 5287.982 kb on + strand, within AO353_24040at 5287.994 kb on + strand, within AO353_24040at 5287.994 kb on + strand, within AO353_24040at 5287.994 kb on + strand, within AO353_24040at 5287.994 kb on + strand, within AO353_24040at 5287.995 kb on - strand, within AO353_24040at 5287.995 kb on - strand, within AO353_24040at 5288.100 kb on - strand, within AO353_24040at 5288.110 kb on + strand, within AO353_24040at 5288.111 kb on - strand, within AO353_24040at 5288.111 kb on - strand, within AO353_24040at 5288.151 kb on - strand, within AO353_24040at 5288.200 kb on + strand, within AO353_24040at 5288.223 kb on + strand, within AO353_24040at 5288.224 kb on - strand, within AO353_24040at 5288.224 kb on - strand, within AO353_24040at 5288.261 kb on + strand, within AO353_24040at 5288.262 kb on - strand, within AO353_24040at 5288.262 kb on - strand, within AO353_24040at 5288.262 kb on - strand, within AO353_24040at 5288.300 kb on + strand, within AO353_24040at 5288.300 kb on + strand, within AO353_24040at 5288.300 kb on + strand, within AO353_24040at 5288.300 kb on + strand, within AO353_24040at 5288.300 kb on + strand, within AO353_24040at 5288.301 kb on - strand, within AO353_24040at 5288.301 kb on - strand, within AO353_24040at 5288.301 kb on - strand, within AO353_24040at 5288.390 kb on - strand, within AO353_24040at 5288.440 kb on + strand, within AO353_24040at 5288.440 kb on + strand, within AO353_24040at 5288.519 kb on + strand, within AO353_24040at 5288.519 kb on + strand, within AO353_24040at 5288.519 kb on + strand, within AO353_24040at 5288.519 kb on + strand, within AO353_24040at 5288.520 kb on - strand, within AO353_24040at 5288.604 kb on - strand, within AO353_24040at 5288.604 kb on - strand, within AO353_24040at 5288.604 kb on - strand, within AO353_24040at 5288.619 kb on + strandat 5288.619 kb on + strandat 5288.619 kb on + strandat 5288.619 kb on + strandat 5288.619 kb on + strandat 5288.620 kb on - strandat 5288.620 kb on - strandat 5288.620 kb on - strandat 5288.620 kb on - strandat 5288.627 kb on + strandat 5288.627 kb on + strandat 5288.627 kb on + strandat 5288.627 kb on + strandat 5288.628 kb on - strandat 5288.628 kb on - strandat 5288.672 kb on + strandat 5288.672 kb on + strandat 5288.672 kb on + strandat 5288.672 kb on + strandat 5288.672 kb on + strandat 5288.673 kb on - strandat 5288.731 kb on + strandat 5288.731 kb on + strandat 5288.731 kb on + strandat 5288.731 kb on + strandat 5288.731 kb on + strandat 5288.731 kb on + strandat 5288.732 kb on - strandat 5288.741 kb on - strandat 5288.926 kb on + strand, within AO353_24045at 5288.927 kb on - strand, within AO353_24045at 5288.927 kb on - strandat 5289.103 kb on + strand, within AO353_24045at 5289.103 kb on + strand, within AO353_24045at 5289.103 kb on + strand, within AO353_24045at 5289.104 kb on - strand, within AO353_24045at 5289.104 kb on - strand, within AO353_24045at 5289.104 kb on - strand, within AO353_24045at 5289.104 kb on - strand, within AO353_24045at 5289.175 kb on + strand, within AO353_24045at 5289.175 kb on + strand, within AO353_24045at 5289.176 kb on - strand, within AO353_24045at 5289.176 kb on - strand, within AO353_24045at 5289.224 kb on + strand, within AO353_24045at 5289.225 kb on - strand, within AO353_24045at 5289.313 kb on + strand, within AO353_24045at 5289.314 kb on - strand, within AO353_24045at 5289.314 kb on - strand, within AO353_24045at 5289.314 kb on - strand, within AO353_24045at 5289.324 kb on + strand, within AO353_24045at 5289.325 kb on - strand, within AO353_24045at 5289.325 kb on - strand, within AO353_24045at 5289.457 kb on + strandat 5289.457 kb on + strandat 5289.457 kb on + strandat 5289.458 kb on - strandat 5289.458 kb on - strandat 5289.458 kb on - strandat 5289.458 kb on - strandat 5289.458 kb on - strandat 5289.458 kb on - strandat 5289.488 kb on + strandat 5289.488 kb on + strandat 5289.488 kb on + strandat 5289.489 kb on - strandat 5289.527 kb on - strandat 5289.612 kb on + strand, within AO353_24050at 5289.612 kb on + strand, within AO353_24050at 5289.613 kb on - strand, within AO353_24050at 5289.689 kb on + strand, within AO353_24050at 5289.750 kb on + strand, within AO353_24050at 5289.750 kb on + strand, within AO353_24050at 5289.750 kb on + strand, within AO353_24050at 5289.751 kb on - strand, within AO353_24050at 5289.774 kb on + strand, within AO353_24050at 5289.774 kb on + strand, within AO353_24050at 5289.774 kb on + strand, within AO353_24050at 5289.775 kb on - strand, within AO353_24050at 5289.802 kb on + strand, within AO353_24050at 5289.802 kb on + strand, within AO353_24050at 5289.802 kb on + strand, within AO353_24050at 5289.802 kb on + strand, within AO353_24050at 5289.803 kb on - strand, within AO353_24050at 5289.812 kb on + strand, within AO353_24050at 5289.812 kb on + strand, within AO353_24050at 5289.813 kb on - strand, within AO353_24050at 5289.813 kb on - strand, within AO353_24050at 5289.888 kb on + strand, within AO353_24050at 5289.888 kb on + strand, within AO353_24050at 5289.888 kb on + strand, within AO353_24050at 5289.888 kb on + strand, within AO353_24050at 5289.888 kb on + strand, within AO353_24050at 5289.889 kb on - strand, within AO353_24050at 5289.889 kb on - strand, within AO353_24050at 5289.889 kb on - strand, within AO353_24050at 5289.889 kb on - strand, within AO353_24050at 5289.889 kb on - strandat 5289.890 kb on + strand, within AO353_24050at 5289.891 kb on - strand, within AO353_24050at 5289.921 kb on + strand, within AO353_24050at 5290.112 kb on + strand, within AO353_24050at 5290.112 kb on + strand, within AO353_24050at 5290.112 kb on + strand, within AO353_24050at 5290.112 kb on + strand, within AO353_24050at 5290.113 kb on - strand, within AO353_24050at 5290.135 kb on - strand, within AO353_24050at 5290.241 kb on + strand, within AO353_24050at 5290.269 kb on + strand, within AO353_24050at 5290.269 kb on + strand, within AO353_24050at 5290.269 kb on + strand, within AO353_24050at 5290.269 kb on + strand, within AO353_24050at 5290.270 kb on - strand, within AO353_24050at 5290.270 kb on - strand, within AO353_24050at 5290.273 kb on + strand, within AO353_24050at 5290.273 kb on + strand, within AO353_24050at 5290.273 kb on + strand, within AO353_24050at 5290.273 kb on + strand, within AO353_24050at 5290.274 kb on - strand, within AO353_24050at 5290.274 kb on - strand, within AO353_24050at 5290.274 kb on - strand, within AO353_24050at 5290.274 kb on - strand, within AO353_24050at 5290.274 kb on - strand, within AO353_24050at 5290.402 kb on - strandat 5290.409 kb on + strandat 5290.462 kb on - strandat 5290.462 kb on - strandat 5290.462 kb on - strandat 5290.462 kb on - strandat 5290.462 kb on - strandat 5290.462 kb on - strandat 5290.482 kb on + strandat 5290.482 kb on + strandat 5290.482 kb on + strandat 5290.483 kb on - strandat 5290.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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5,287,732 + +0.9
5,287,759 - -0.9
5,287,759 - -0.8
5,287,759 - -1.5
5,287,856 + -1.8
5,287,856 + -2.1
5,287,857 - -3.4
5,287,857 - -2.1
5,287,857 - -0.9
5,287,857 - -1.5
5,287,919 + AO353_24040 0.16 -1.7
5,287,919 + AO353_24040 0.16 -2.8
5,287,919 + AO353_24040 0.16 -1.5
5,287,919 + -0.7
5,287,959 + AO353_24040 0.21 +0.4
5,287,982 + AO353_24040 0.23 -1.8
5,287,994 + AO353_24040 0.24 -0.8
5,287,994 + AO353_24040 0.24 -0.9
5,287,994 + AO353_24040 0.24 -1.3
5,287,994 + AO353_24040 0.24 -2.8
5,287,995 - AO353_24040 0.24 -1.2
5,287,995 - AO353_24040 0.24 -1.3
5,288,100 - AO353_24040 0.35 -1.4
5,288,110 + AO353_24040 0.36 -1.1
5,288,111 - AO353_24040 0.37 -2.3
5,288,111 - AO353_24040 0.37 -1.3
5,288,151 - AO353_24040 0.41 -0.1
5,288,200 + AO353_24040 0.46 +0.3
5,288,223 + AO353_24040 0.48 -2.3
5,288,224 - AO353_24040 0.48 +1.9
5,288,224 - AO353_24040 0.48 -1.3
5,288,261 + AO353_24040 0.52 -2.1
5,288,262 - AO353_24040 0.52 +0.6
5,288,262 - AO353_24040 0.52 -1.2
5,288,262 - AO353_24040 0.52 -1.1
5,288,300 + AO353_24040 0.56 -1.1
5,288,300 + AO353_24040 0.56 -1.1
5,288,300 + AO353_24040 0.56 -0.4
5,288,300 + AO353_24040 0.56 -2.5
5,288,300 + AO353_24040 0.56 -0.9
5,288,301 - AO353_24040 0.57 -2.8
5,288,301 - AO353_24040 0.57 -2.0
5,288,301 - AO353_24040 0.57 -0.9
5,288,390 - AO353_24040 0.66 -2.3
5,288,440 + AO353_24040 0.71 -2.4
5,288,440 + AO353_24040 0.71 -2.3
5,288,519 + AO353_24040 0.79 -2.3
5,288,519 + AO353_24040 0.79 -2.4
5,288,519 + AO353_24040 0.79 -2.7
5,288,519 + AO353_24040 0.79 -2.0
5,288,520 - AO353_24040 0.80 -2.7
5,288,604 - AO353_24040 0.88 -1.7
5,288,604 - AO353_24040 0.88 -2.0
5,288,604 - AO353_24040 0.88 -1.7
5,288,619 + -0.7
5,288,619 + -2.0
5,288,619 + -0.7
5,288,619 + +0.9
5,288,619 + -0.2
5,288,620 - -3.3
5,288,620 - +0.9
5,288,620 - +0.7
5,288,620 - -0.4
5,288,627 + -0.1
5,288,627 + -2.1
5,288,627 + -1.6
5,288,627 + -1.4
5,288,628 - -0.4
5,288,628 - -0.3
5,288,672 + +0.7
5,288,672 + +0.1
5,288,672 + -1.7
5,288,672 + -1.3
5,288,672 + -1.8
5,288,673 - -1.7
5,288,731 + -1.3
5,288,731 + -0.1
5,288,731 + -3.2
5,288,731 + -1.3
5,288,731 + +0.3
5,288,731 + -0.4
5,288,732 - -1.5
5,288,741 - -1.3
5,288,926 + AO353_24045 0.28 -0.1
5,288,927 - AO353_24045 0.28 -1.0
5,288,927 - +0.6
5,289,103 + AO353_24045 0.50 +0.9
5,289,103 + AO353_24045 0.50 -1.5
5,289,103 + AO353_24045 0.50 -1.9
5,289,104 - AO353_24045 0.50 -0.7
5,289,104 - AO353_24045 0.50 -1.5
5,289,104 - AO353_24045 0.50 +0.1
5,289,104 - AO353_24045 0.50 -1.2
5,289,175 + AO353_24045 0.59 -1.4
5,289,175 + AO353_24045 0.59 -1.1
5,289,176 - AO353_24045 0.60 -0.4
5,289,176 - AO353_24045 0.60 -0.9
5,289,224 + AO353_24045 0.66 -1.4
5,289,225 - AO353_24045 0.66 -2.3
5,289,313 + AO353_24045 0.77 -1.3
5,289,314 - AO353_24045 0.77 -1.3
5,289,314 - AO353_24045 0.77 +0.2
5,289,314 - AO353_24045 0.77 -2.7
5,289,324 + AO353_24045 0.78 -0.1
5,289,325 - AO353_24045 0.79 -2.5
5,289,325 - AO353_24045 0.79 -2.1
5,289,457 + -1.8
5,289,457 + -0.2
5,289,457 + -3.0
5,289,458 - -1.5
5,289,458 - -3.3
5,289,458 - -2.3
5,289,458 - -1.4
5,289,458 - -2.0
5,289,458 - -1.1
5,289,488 + -0.5
5,289,488 + +0.7
5,289,488 + -0.5
5,289,489 - -1.5
5,289,527 - -2.3
5,289,612 + AO353_24050 0.12 +0.3
5,289,612 + AO353_24050 0.12 +1.1
5,289,613 - AO353_24050 0.13 +0.7
5,289,689 + AO353_24050 0.20 -2.9
5,289,750 + AO353_24050 0.27 -1.3
5,289,750 + AO353_24050 0.27 -0.4
5,289,750 + AO353_24050 0.27 -0.9
5,289,751 - AO353_24050 0.27 +0.0
5,289,774 + AO353_24050 0.29 -2.5
5,289,774 + AO353_24050 0.29 -0.4
5,289,774 + AO353_24050 0.29 -1.5
5,289,775 - AO353_24050 0.29 -0.7
5,289,802 + AO353_24050 0.32 -0.9
5,289,802 + AO353_24050 0.32 -0.4
5,289,802 + AO353_24050 0.32 -1.4
5,289,802 + AO353_24050 0.32 -1.5
5,289,803 - AO353_24050 0.32 -2.5
5,289,812 + AO353_24050 0.33 +0.0
5,289,812 + AO353_24050 0.33 -1.3
5,289,813 - AO353_24050 0.33 -1.3
5,289,813 - AO353_24050 0.33 +0.2
5,289,888 + AO353_24050 0.41 -0.7
5,289,888 + AO353_24050 0.41 -1.1
5,289,888 + AO353_24050 0.41 -0.6
5,289,888 + AO353_24050 0.41 -1.3
5,289,888 + AO353_24050 0.41 -2.3
5,289,889 - AO353_24050 0.41 -0.7
5,289,889 - AO353_24050 0.41 -0.4
5,289,889 - AO353_24050 0.41 -0.5
5,289,889 - AO353_24050 0.41 +0.9
5,289,889 - +1.9
5,289,890 + AO353_24050 0.41 -0.4
5,289,891 - AO353_24050 0.41 -0.8
5,289,921 + AO353_24050 0.44 -0.1
5,290,112 + AO353_24050 0.63 -2.3
5,290,112 + AO353_24050 0.63 +0.9
5,290,112 + AO353_24050 0.63 -0.9
5,290,112 + AO353_24050 0.63 -1.7
5,290,113 - AO353_24050 0.63 -0.9
5,290,135 - AO353_24050 0.66 -1.4
5,290,241 + AO353_24050 0.76 -0.4
5,290,269 + AO353_24050 0.79 -0.0
5,290,269 + AO353_24050 0.79 -1.1
5,290,269 + AO353_24050 0.79 -0.4
5,290,269 + AO353_24050 0.79 -1.8
5,290,270 - AO353_24050 0.79 -0.9
5,290,270 - AO353_24050 0.79 +0.8
5,290,273 + AO353_24050 0.80 -1.8
5,290,273 + AO353_24050 0.80 -2.5
5,290,273 + AO353_24050 0.80 -1.4
5,290,273 + AO353_24050 0.80 +0.3
5,290,274 - AO353_24050 0.80 -2.1
5,290,274 - AO353_24050 0.80 +0.9
5,290,274 - AO353_24050 0.80 -2.5
5,290,274 - AO353_24050 0.80 -3.1
5,290,274 - AO353_24050 0.80 +0.9
5,290,402 - -0.4
5,290,409 + -1.3
5,290,462 - -1.5
5,290,462 - +0.9
5,290,462 - -2.2
5,290,462 - -0.7
5,290,462 - -1.9
5,290,462 - -0.9
5,290,482 + -0.7
5,290,482 + +1.1
5,290,482 + +0.5
5,290,483 - -1.4
5,290,483 - +0.3

Or see this region's nucleotide sequence