Experiment: 4C survival; 672 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23510 and AO353_23515 are separated by 127 nucleotides AO353_23515 and AO353_23520 are separated by 10 nucleotides AO353_23520 and AO353_23525 are separated by 51 nucleotides
AO353_23510: AO353_23510 - transcriptional regulator, at 5,149,565 to 5,150,455
_23510
AO353_23515: AO353_23515 - muconate cycloisomerase, at 5,150,583 to 5,151,731
_23515
AO353_23520: AO353_23520 - muconolactone delta-isomerase, at 5,151,742 to 5,152,032
_23520
AO353_23525: AO353_23525 - Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data) , at 5,152,084 to 5,153,013
_23525
Position (kb)
5150
5151
5152 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5149.821 kb on + strand, within AO353_23510 at 5149.854 kb on + strand, within AO353_23510 at 5149.854 kb on + strand, within AO353_23510 at 5149.854 kb on + strand, within AO353_23510 at 5149.855 kb on - strand, within AO353_23510 at 5149.855 kb on - strand, within AO353_23510 at 5149.879 kb on - strand, within AO353_23510 at 5149.979 kb on + strand, within AO353_23510 at 5150.008 kb on + strand, within AO353_23510 at 5150.035 kb on + strand, within AO353_23510 at 5150.036 kb on - strand, within AO353_23510 at 5150.152 kb on - strand, within AO353_23510 at 5150.434 kb on - strand at 5150.434 kb on - strand at 5150.513 kb on + strand at 5150.514 kb on - strand at 5150.514 kb on - strand at 5150.699 kb on - strand, within AO353_23515 at 5150.763 kb on - strand, within AO353_23515 at 5150.837 kb on + strand, within AO353_23515 at 5150.838 kb on - strand, within AO353_23515 at 5150.838 kb on - strand, within AO353_23515 at 5150.874 kb on - strand, within AO353_23515 at 5150.885 kb on + strand, within AO353_23515 at 5150.886 kb on - strand, within AO353_23515 at 5150.886 kb on - strand, within AO353_23515 at 5150.894 kb on + strand, within AO353_23515 at 5150.895 kb on - strand, within AO353_23515 at 5150.977 kb on + strand, within AO353_23515 at 5150.978 kb on - strand, within AO353_23515 at 5151.755 kb on + strand at 5151.756 kb on - strand at 5151.756 kb on - strand at 5151.756 kb on - strand at 5151.898 kb on + strand, within AO353_23520 at 5151.898 kb on + strand, within AO353_23520 at 5151.898 kb on + strand, within AO353_23520 at 5151.898 kb on + strand, within AO353_23520 at 5151.899 kb on - strand, within AO353_23520 at 5151.899 kb on - strand, within AO353_23520 at 5151.899 kb on - strand, within AO353_23520 at 5151.967 kb on + strand, within AO353_23520 at 5151.967 kb on + strand, within AO353_23520 at 5151.967 kb on + strand, within AO353_23520 at 5151.968 kb on - strand, within AO353_23520 at 5151.968 kb on - strand, within AO353_23520 at 5151.968 kb on - strand, within AO353_23520 at 5151.968 kb on - strand, within AO353_23520 at 5151.968 kb on - strand, within AO353_23520 at 5152.011 kb on + strand at 5152.054 kb on - strand at 5152.058 kb on + strand at 5152.058 kb on + strand at 5152.059 kb on - strand at 5152.061 kb on + strand at 5152.061 kb on + strand at 5152.062 kb on - strand at 5152.062 kb on - strand at 5152.065 kb on + strand at 5152.065 kb on + strand at 5152.065 kb on + strand at 5152.065 kb on + strand at 5152.065 kb on + strand at 5152.066 kb on - strand at 5152.080 kb on - strand at 5152.186 kb on + strand, within AO353_23525 at 5152.187 kb on - strand, within AO353_23525 at 5152.264 kb on + strand, within AO353_23525 at 5152.265 kb on - strand, within AO353_23525 at 5152.330 kb on + strand, within AO353_23525 at 5152.331 kb on - strand, within AO353_23525 at 5152.331 kb on - strand, within AO353_23525 at 5152.331 kb on - strand, within AO353_23525 at 5152.372 kb on - strand, within AO353_23525 at 5152.411 kb on + strand, within AO353_23525 at 5152.412 kb on - strand, within AO353_23525 at 5152.570 kb on + strand, within AO353_23525 at 5152.570 kb on + strand, within AO353_23525 at 5152.570 kb on + strand, within AO353_23525 at 5152.570 kb on + strand, within AO353_23525 at 5152.570 kb on + strand, within AO353_23525 at 5152.571 kb on - strand, within AO353_23525 at 5152.571 kb on - strand, within AO353_23525 at 5152.576 kb on + strand, within AO353_23525 at 5152.577 kb on - strand, within AO353_23525 at 5152.577 kb on - strand, within AO353_23525
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 672 hrs remove 5,149,821 + AO353_23510 0.29 -0.3 5,149,854 + AO353_23510 0.32 +0.3 5,149,854 + AO353_23510 0.32 +0.8 5,149,854 + AO353_23510 0.32 -2.0 5,149,855 - AO353_23510 0.33 -2.0 5,149,855 - AO353_23510 0.33 +0.3 5,149,879 - AO353_23510 0.35 +0.5 5,149,979 + AO353_23510 0.46 -1.1 5,150,008 + AO353_23510 0.50 -0.2 5,150,035 + AO353_23510 0.53 -0.9 5,150,036 - AO353_23510 0.53 +0.5 5,150,152 - AO353_23510 0.66 -1.8 5,150,434 - -0.0 5,150,434 - -1.2 5,150,513 + -2.5 5,150,514 - -1.3 5,150,514 - -1.7 5,150,699 - AO353_23515 0.10 +1.3 5,150,763 - AO353_23515 0.16 +0.1 5,150,837 + AO353_23515 0.22 -0.1 5,150,838 - AO353_23515 0.22 +1.3 5,150,838 - AO353_23515 0.22 +0.2 5,150,874 - AO353_23515 0.25 -0.1 5,150,885 + AO353_23515 0.26 +1.2 5,150,886 - AO353_23515 0.26 +0.3 5,150,886 - AO353_23515 0.26 +0.8 5,150,894 + AO353_23515 0.27 -1.5 5,150,895 - AO353_23515 0.27 -0.1 5,150,977 + AO353_23515 0.34 -1.2 5,150,978 - AO353_23515 0.34 +0.7 5,151,755 + -0.2 5,151,756 - +0.2 5,151,756 - +0.8 5,151,756 - +1.2 5,151,898 + AO353_23520 0.54 -0.9 5,151,898 + AO353_23520 0.54 -1.4 5,151,898 + AO353_23520 0.54 +0.3 5,151,898 + AO353_23520 0.54 -1.7 5,151,899 - AO353_23520 0.54 -0.3 5,151,899 - AO353_23520 0.54 -3.1 5,151,899 - AO353_23520 0.54 +0.3 5,151,967 + AO353_23520 0.77 -1.7 5,151,967 + AO353_23520 0.77 +0.1 5,151,967 + AO353_23520 0.77 -0.0 5,151,968 - AO353_23520 0.78 +1.6 5,151,968 - AO353_23520 0.78 -0.6 5,151,968 - AO353_23520 0.78 +0.3 5,151,968 - AO353_23520 0.78 +1.1 5,151,968 - AO353_23520 0.78 +1.6 5,152,011 + -0.5 5,152,054 - +1.9 5,152,058 + +0.6 5,152,058 + +1.2 5,152,059 - +0.5 5,152,061 + +0.3 5,152,061 + -1.2 5,152,062 - -1.2 5,152,062 - -0.7 5,152,065 + -1.0 5,152,065 + +1.5 5,152,065 + +0.0 5,152,065 + -1.7 5,152,065 + +1.6 5,152,066 - -0.4 5,152,080 - -1.7 5,152,186 + AO353_23525 0.11 -1.1 5,152,187 - AO353_23525 0.11 +0.5 5,152,264 + AO353_23525 0.19 -1.8 5,152,265 - AO353_23525 0.19 -1.5 5,152,330 + AO353_23525 0.26 -0.4 5,152,331 - AO353_23525 0.27 +0.3 5,152,331 - AO353_23525 0.27 -0.5 5,152,331 - AO353_23525 0.27 +0.6 5,152,372 - AO353_23525 0.31 +0.1 5,152,411 + AO353_23525 0.35 +1.2 5,152,412 - AO353_23525 0.35 -1.9 5,152,570 + AO353_23525 0.52 +0.9 5,152,570 + AO353_23525 0.52 -0.1 5,152,570 + AO353_23525 0.52 -0.7 5,152,570 + AO353_23525 0.52 -1.4 5,152,570 + AO353_23525 0.52 +0.2 5,152,571 - AO353_23525 0.52 -1.2 5,152,571 - AO353_23525 0.52 -0.5 5,152,576 + AO353_23525 0.53 -0.1 5,152,577 - AO353_23525 0.53 -0.0 5,152,577 - AO353_23525 0.53 -1.5
Or see this region's nucleotide sequence