Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23515

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23510 and AO353_23515 are separated by 127 nucleotidesAO353_23515 and AO353_23520 are separated by 10 nucleotidesAO353_23520 and AO353_23525 are separated by 51 nucleotides AO353_23510: AO353_23510 - transcriptional regulator, at 5,149,565 to 5,150,455 _23510 AO353_23515: AO353_23515 - muconate cycloisomerase, at 5,150,583 to 5,151,731 _23515 AO353_23520: AO353_23520 - muconolactone delta-isomerase, at 5,151,742 to 5,152,032 _23520 AO353_23525: AO353_23525 - Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data), at 5,152,084 to 5,153,013 _23525 Position (kb) 5150 5151 5152Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5149.821 kb on + strand, within AO353_23510at 5149.854 kb on + strand, within AO353_23510at 5149.854 kb on + strand, within AO353_23510at 5149.854 kb on + strand, within AO353_23510at 5149.855 kb on - strand, within AO353_23510at 5149.855 kb on - strand, within AO353_23510at 5149.879 kb on - strand, within AO353_23510at 5149.979 kb on + strand, within AO353_23510at 5150.008 kb on + strand, within AO353_23510at 5150.035 kb on + strand, within AO353_23510at 5150.036 kb on - strand, within AO353_23510at 5150.152 kb on - strand, within AO353_23510at 5150.434 kb on - strandat 5150.434 kb on - strandat 5150.513 kb on + strandat 5150.514 kb on - strandat 5150.514 kb on - strandat 5150.699 kb on - strand, within AO353_23515at 5150.763 kb on - strand, within AO353_23515at 5150.837 kb on + strand, within AO353_23515at 5150.838 kb on - strand, within AO353_23515at 5150.838 kb on - strand, within AO353_23515at 5150.874 kb on - strand, within AO353_23515at 5150.885 kb on + strand, within AO353_23515at 5150.886 kb on - strand, within AO353_23515at 5150.886 kb on - strand, within AO353_23515at 5150.894 kb on + strand, within AO353_23515at 5150.895 kb on - strand, within AO353_23515at 5150.977 kb on + strand, within AO353_23515at 5150.978 kb on - strand, within AO353_23515at 5151.755 kb on + strandat 5151.756 kb on - strandat 5151.756 kb on - strandat 5151.756 kb on - strandat 5151.898 kb on + strand, within AO353_23520at 5151.898 kb on + strand, within AO353_23520at 5151.898 kb on + strand, within AO353_23520at 5151.898 kb on + strand, within AO353_23520at 5151.899 kb on - strand, within AO353_23520at 5151.899 kb on - strand, within AO353_23520at 5151.899 kb on - strand, within AO353_23520at 5151.967 kb on + strand, within AO353_23520at 5151.967 kb on + strand, within AO353_23520at 5151.967 kb on + strand, within AO353_23520at 5151.968 kb on - strand, within AO353_23520at 5151.968 kb on - strand, within AO353_23520at 5151.968 kb on - strand, within AO353_23520at 5151.968 kb on - strand, within AO353_23520at 5151.968 kb on - strand, within AO353_23520at 5152.011 kb on + strandat 5152.054 kb on - strandat 5152.058 kb on + strandat 5152.058 kb on + strandat 5152.059 kb on - strandat 5152.061 kb on + strandat 5152.061 kb on + strandat 5152.062 kb on - strandat 5152.062 kb on - strandat 5152.065 kb on + strandat 5152.065 kb on + strandat 5152.065 kb on + strandat 5152.065 kb on + strandat 5152.065 kb on + strandat 5152.066 kb on - strandat 5152.080 kb on - strandat 5152.186 kb on + strand, within AO353_23525at 5152.187 kb on - strand, within AO353_23525at 5152.264 kb on + strand, within AO353_23525at 5152.265 kb on - strand, within AO353_23525at 5152.330 kb on + strand, within AO353_23525at 5152.331 kb on - strand, within AO353_23525at 5152.331 kb on - strand, within AO353_23525at 5152.331 kb on - strand, within AO353_23525at 5152.372 kb on - strand, within AO353_23525at 5152.411 kb on + strand, within AO353_23525at 5152.412 kb on - strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.571 kb on - strand, within AO353_23525at 5152.571 kb on - strand, within AO353_23525at 5152.576 kb on + strand, within AO353_23525at 5152.577 kb on - strand, within AO353_23525at 5152.577 kb on - strand, within AO353_23525

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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5,149,821 + AO353_23510 0.29 -0.3
5,149,854 + AO353_23510 0.32 +0.3
5,149,854 + AO353_23510 0.32 +0.8
5,149,854 + AO353_23510 0.32 -2.0
5,149,855 - AO353_23510 0.33 -2.0
5,149,855 - AO353_23510 0.33 +0.3
5,149,879 - AO353_23510 0.35 +0.5
5,149,979 + AO353_23510 0.46 -1.1
5,150,008 + AO353_23510 0.50 -0.2
5,150,035 + AO353_23510 0.53 -0.9
5,150,036 - AO353_23510 0.53 +0.5
5,150,152 - AO353_23510 0.66 -1.8
5,150,434 - -0.0
5,150,434 - -1.2
5,150,513 + -2.5
5,150,514 - -1.3
5,150,514 - -1.7
5,150,699 - AO353_23515 0.10 +1.3
5,150,763 - AO353_23515 0.16 +0.1
5,150,837 + AO353_23515 0.22 -0.1
5,150,838 - AO353_23515 0.22 +1.3
5,150,838 - AO353_23515 0.22 +0.2
5,150,874 - AO353_23515 0.25 -0.1
5,150,885 + AO353_23515 0.26 +1.2
5,150,886 - AO353_23515 0.26 +0.3
5,150,886 - AO353_23515 0.26 +0.8
5,150,894 + AO353_23515 0.27 -1.5
5,150,895 - AO353_23515 0.27 -0.1
5,150,977 + AO353_23515 0.34 -1.2
5,150,978 - AO353_23515 0.34 +0.7
5,151,755 + -0.2
5,151,756 - +0.2
5,151,756 - +0.8
5,151,756 - +1.2
5,151,898 + AO353_23520 0.54 -0.9
5,151,898 + AO353_23520 0.54 -1.4
5,151,898 + AO353_23520 0.54 +0.3
5,151,898 + AO353_23520 0.54 -1.7
5,151,899 - AO353_23520 0.54 -0.3
5,151,899 - AO353_23520 0.54 -3.1
5,151,899 - AO353_23520 0.54 +0.3
5,151,967 + AO353_23520 0.77 -1.7
5,151,967 + AO353_23520 0.77 +0.1
5,151,967 + AO353_23520 0.77 -0.0
5,151,968 - AO353_23520 0.78 +1.6
5,151,968 - AO353_23520 0.78 -0.6
5,151,968 - AO353_23520 0.78 +0.3
5,151,968 - AO353_23520 0.78 +1.1
5,151,968 - AO353_23520 0.78 +1.6
5,152,011 + -0.5
5,152,054 - +1.9
5,152,058 + +0.6
5,152,058 + +1.2
5,152,059 - +0.5
5,152,061 + +0.3
5,152,061 + -1.2
5,152,062 - -1.2
5,152,062 - -0.7
5,152,065 + -1.0
5,152,065 + +1.5
5,152,065 + +0.0
5,152,065 + -1.7
5,152,065 + +1.6
5,152,066 - -0.4
5,152,080 - -1.7
5,152,186 + AO353_23525 0.11 -1.1
5,152,187 - AO353_23525 0.11 +0.5
5,152,264 + AO353_23525 0.19 -1.8
5,152,265 - AO353_23525 0.19 -1.5
5,152,330 + AO353_23525 0.26 -0.4
5,152,331 - AO353_23525 0.27 +0.3
5,152,331 - AO353_23525 0.27 -0.5
5,152,331 - AO353_23525 0.27 +0.6
5,152,372 - AO353_23525 0.31 +0.1
5,152,411 + AO353_23525 0.35 +1.2
5,152,412 - AO353_23525 0.35 -1.9
5,152,570 + AO353_23525 0.52 +0.9
5,152,570 + AO353_23525 0.52 -0.1
5,152,570 + AO353_23525 0.52 -0.7
5,152,570 + AO353_23525 0.52 -1.4
5,152,570 + AO353_23525 0.52 +0.2
5,152,571 - AO353_23525 0.52 -1.2
5,152,571 - AO353_23525 0.52 -0.5
5,152,576 + AO353_23525 0.53 -0.1
5,152,577 - AO353_23525 0.53 -0.0
5,152,577 - AO353_23525 0.53 -1.5

Or see this region's nucleotide sequence