Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23055

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23050 and AO353_23055 are separated by 537 nucleotidesAO353_23055 and AO353_23060 overlap by 4 nucleotides AO353_23050: AO353_23050 - SAM-dependent methyltransferase, at 5,058,916 to 5,059,632 _23050 AO353_23055: AO353_23055 - methylmalonyl-CoA decarboxylase, at 5,060,170 to 5,060,970 _23055 AO353_23060: AO353_23060 - CaiB/baiF CoA-transferase, at 5,060,967 to 5,062,223 _23060 Position (kb) 5060 5061Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 5059.214 kb on + strand, within AO353_23050at 5059.214 kb on + strand, within AO353_23050at 5059.214 kb on + strand, within AO353_23050at 5059.215 kb on - strand, within AO353_23050at 5059.215 kb on - strand, within AO353_23050at 5059.215 kb on - strand, within AO353_23050at 5059.215 kb on - strand, within AO353_23050at 5059.273 kb on + strand, within AO353_23050at 5059.273 kb on + strand, within AO353_23050at 5059.273 kb on + strand, within AO353_23050at 5059.274 kb on - strand, within AO353_23050at 5059.274 kb on - strand, within AO353_23050at 5059.298 kb on + strand, within AO353_23050at 5059.298 kb on + strand, within AO353_23050at 5059.298 kb on + strand, within AO353_23050at 5059.299 kb on - strand, within AO353_23050at 5059.340 kb on + strand, within AO353_23050at 5059.340 kb on + strand, within AO353_23050at 5059.340 kb on + strand, within AO353_23050at 5059.340 kb on + strand, within AO353_23050at 5059.340 kb on + strand, within AO353_23050at 5059.340 kb on + strand, within AO353_23050at 5059.340 kb on + strand, within AO353_23050at 5059.341 kb on - strand, within AO353_23050at 5059.341 kb on - strand, within AO353_23050at 5059.341 kb on - strand, within AO353_23050at 5059.341 kb on - strand, within AO353_23050at 5059.361 kb on + strand, within AO353_23050at 5059.361 kb on + strand, within AO353_23050at 5059.361 kb on + strand, within AO353_23050at 5059.362 kb on - strand, within AO353_23050at 5059.362 kb on - strand, within AO353_23050at 5059.362 kb on - strand, within AO353_23050at 5059.399 kb on + strand, within AO353_23050at 5059.399 kb on + strand, within AO353_23050at 5059.400 kb on - strand, within AO353_23050at 5059.400 kb on - strand, within AO353_23050at 5059.405 kb on + strand, within AO353_23050at 5059.406 kb on - strand, within AO353_23050at 5059.406 kb on - strand, within AO353_23050at 5059.406 kb on - strand, within AO353_23050at 5059.406 kb on - strand, within AO353_23050at 5059.406 kb on - strand, within AO353_23050at 5059.620 kb on + strandat 5059.620 kb on + strandat 5059.620 kb on + strandat 5059.620 kb on + strandat 5059.621 kb on - strandat 5059.621 kb on - strandat 5059.667 kb on + strandat 5059.668 kb on - strandat 5059.788 kb on + strandat 5059.788 kb on + strandat 5059.789 kb on - strandat 5059.806 kb on + strandat 5059.807 kb on - strandat 5059.807 kb on - strandat 5059.825 kb on + strandat 5059.825 kb on + strandat 5059.825 kb on + strandat 5059.882 kb on + strandat 5059.882 kb on + strandat 5059.882 kb on + strandat 5059.882 kb on + strandat 5059.882 kb on + strandat 5059.883 kb on - strandat 5059.883 kb on - strandat 5059.883 kb on - strandat 5059.914 kb on + strandat 5059.914 kb on + strandat 5059.915 kb on - strandat 5059.915 kb on - strandat 5059.949 kb on + strandat 5059.950 kb on - strandat 5059.950 kb on - strandat 5059.950 kb on - strandat 5059.950 kb on - strandat 5059.957 kb on - strandat 5059.957 kb on - strandat 5059.957 kb on - strandat 5059.957 kb on - strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5060.016 kb on - strandat 5060.031 kb on + strandat 5060.031 kb on + strandat 5060.031 kb on + strandat 5060.032 kb on - strandat 5060.032 kb on - strandat 5060.032 kb on - strandat 5060.033 kb on + strandat 5060.033 kb on + strandat 5060.123 kb on + strandat 5060.124 kb on - strandat 5060.134 kb on + strandat 5060.135 kb on - strandat 5060.135 kb on - strandat 5060.425 kb on + strand, within AO353_23055at 5060.425 kb on + strand, within AO353_23055at 5060.426 kb on - strand, within AO353_23055at 5060.426 kb on - strand, within AO353_23055at 5060.426 kb on - strand, within AO353_23055at 5060.426 kb on - strand, within AO353_23055at 5060.426 kb on - strand, within AO353_23055at 5060.488 kb on + strand, within AO353_23055at 5060.488 kb on + strand, within AO353_23055at 5060.489 kb on - strand, within AO353_23055at 5060.489 kb on - strand, within AO353_23055at 5060.489 kb on - strand, within AO353_23055at 5060.537 kb on + strand, within AO353_23055at 5060.537 kb on + strand, within AO353_23055at 5060.537 kb on + strand, within AO353_23055at 5060.537 kb on + strand, within AO353_23055at 5060.538 kb on - strand, within AO353_23055at 5060.797 kb on + strand, within AO353_23055at 5060.811 kb on + strand, within AO353_23055at 5060.811 kb on + strand, within AO353_23055at 5060.811 kb on + strand, within AO353_23055at 5060.811 kb on + strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5061.278 kb on + strand, within AO353_23060at 5061.278 kb on + strand, within AO353_23060at 5061.278 kb on + strand, within AO353_23060at 5061.365 kb on + strand, within AO353_23060at 5061.365 kb on + strand, within AO353_23060at 5061.365 kb on + strand, within AO353_23060at 5061.365 kb on + strand, within AO353_23060at 5061.366 kb on - strand, within AO353_23060at 5061.366 kb on - strand, within AO353_23060at 5061.456 kb on + strand, within AO353_23060at 5061.457 kb on - strand, within AO353_23060at 5061.457 kb on - strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.583 kb on - strand, within AO353_23060at 5061.583 kb on - strand, within AO353_23060at 5061.583 kb on - strand, within AO353_23060at 5061.583 kb on - strand, within AO353_23060at 5061.586 kb on + strand, within AO353_23060at 5061.586 kb on + strand, within AO353_23060at 5061.793 kb on + strandat 5061.793 kb on + strand, within AO353_23060at 5061.794 kb on - strand, within AO353_23060at 5061.904 kb on + strand, within AO353_23060at 5061.904 kb on + strand, within AO353_23060at 5061.905 kb on - strand, within AO353_23060at 5061.905 kb on - strand, within AO353_23060at 5061.905 kb on - strand, within AO353_23060at 5061.905 kb on - strand, within AO353_23060

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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5,059,214 + AO353_23050 0.42 +0.8
5,059,214 + AO353_23050 0.42 +1.0
5,059,214 + AO353_23050 0.42 +1.7
5,059,215 - AO353_23050 0.42 +0.9
5,059,215 - AO353_23050 0.42 +0.4
5,059,215 - AO353_23050 0.42 -0.0
5,059,215 - AO353_23050 0.42 -0.8
5,059,273 + AO353_23050 0.50 +3.3
5,059,273 + AO353_23050 0.50 -0.2
5,059,273 + AO353_23050 0.50 -0.9
5,059,274 - AO353_23050 0.50 -0.0
5,059,274 - AO353_23050 0.50 +0.9
5,059,298 + AO353_23050 0.53 +0.2
5,059,298 + AO353_23050 0.53 +1.4
5,059,298 + AO353_23050 0.53 +1.0
5,059,299 - AO353_23050 0.53 -0.8
5,059,340 + AO353_23050 0.59 +0.5
5,059,340 + AO353_23050 0.59 -0.6
5,059,340 + AO353_23050 0.59 +0.5
5,059,340 + AO353_23050 0.59 -0.2
5,059,340 + AO353_23050 0.59 -1.3
5,059,340 + AO353_23050 0.59 -0.5
5,059,340 + AO353_23050 0.59 +1.5
5,059,341 - AO353_23050 0.59 +0.4
5,059,341 - AO353_23050 0.59 -0.8
5,059,341 - AO353_23050 0.59 -0.6
5,059,341 - AO353_23050 0.59 -0.7
5,059,361 + AO353_23050 0.62 -1.1
5,059,361 + AO353_23050 0.62 -0.4
5,059,361 + AO353_23050 0.62 +0.6
5,059,362 - AO353_23050 0.62 +2.2
5,059,362 - AO353_23050 0.62 -1.2
5,059,362 - AO353_23050 0.62 +0.8
5,059,399 + AO353_23050 0.67 +0.2
5,059,399 + AO353_23050 0.67 +0.2
5,059,400 - AO353_23050 0.68 +2.3
5,059,400 - AO353_23050 0.68 -0.9
5,059,405 + AO353_23050 0.68 +1.6
5,059,406 - AO353_23050 0.68 +1.4
5,059,406 - AO353_23050 0.68 +1.5
5,059,406 - AO353_23050 0.68 +0.4
5,059,406 - AO353_23050 0.68 +0.6
5,059,406 - AO353_23050 0.68 +1.3
5,059,620 + +0.0
5,059,620 + -0.8
5,059,620 + -0.0
5,059,620 + +0.7
5,059,621 - -0.2
5,059,621 - +1.1
5,059,667 + +0.0
5,059,668 - +0.4
5,059,788 + -0.8
5,059,788 + +1.2
5,059,789 - +0.1
5,059,806 + -1.2
5,059,807 - -2.0
5,059,807 - +0.4
5,059,825 + -0.6
5,059,825 + +1.5
5,059,825 + -1.9
5,059,882 + +0.4
5,059,882 + -0.8
5,059,882 + +0.4
5,059,882 + -0.6
5,059,882 + +0.7
5,059,883 - -0.0
5,059,883 - +0.6
5,059,883 - -1.8
5,059,914 + +1.1
5,059,914 + -0.7
5,059,915 - +2.0
5,059,915 - -0.2
5,059,949 + -0.7
5,059,950 - -0.7
5,059,950 - -0.3
5,059,950 - -0.4
5,059,950 - +3.0
5,059,957 - -1.6
5,059,957 - -0.5
5,059,957 - -0.4
5,059,957 - -1.4
5,059,995 + -0.1
5,059,995 + +0.2
5,059,995 + -0.2
5,059,995 + +0.3
5,059,995 + -0.2
5,059,995 + +0.4
5,059,995 + -1.2
5,059,995 + +1.0
5,059,995 + +0.4
5,059,995 + +0.8
5,059,996 - -1.1
5,059,996 - -0.7
5,059,996 - -2.0
5,059,996 - +0.9
5,059,996 - -0.7
5,059,996 - +0.3
5,059,996 - +0.2
5,059,996 - +0.2
5,060,016 - +1.8
5,060,031 + -2.6
5,060,031 + +0.5
5,060,031 + +1.0
5,060,032 - -2.1
5,060,032 - +0.2
5,060,032 - -0.0
5,060,033 + -1.2
5,060,033 + +2.0
5,060,123 + +1.0
5,060,124 - -1.7
5,060,134 + +1.0
5,060,135 - -1.6
5,060,135 - +0.9
5,060,425 + AO353_23055 0.32 +0.3
5,060,425 + AO353_23055 0.32 -0.2
5,060,426 - AO353_23055 0.32 +0.6
5,060,426 - AO353_23055 0.32 +0.3
5,060,426 - AO353_23055 0.32 +1.1
5,060,426 - AO353_23055 0.32 -0.2
5,060,426 - AO353_23055 0.32 +0.8
5,060,488 + AO353_23055 0.40 -0.4
5,060,488 + AO353_23055 0.40 +1.2
5,060,489 - AO353_23055 0.40 -0.8
5,060,489 - AO353_23055 0.40 +0.2
5,060,489 - AO353_23055 0.40 -2.3
5,060,537 + AO353_23055 0.46 -0.9
5,060,537 + AO353_23055 0.46 -0.2
5,060,537 + AO353_23055 0.46 -0.4
5,060,537 + AO353_23055 0.46 -0.8
5,060,538 - AO353_23055 0.46 +0.6
5,060,797 + AO353_23055 0.78 -0.6
5,060,811 + AO353_23055 0.80 +0.5
5,060,811 + AO353_23055 0.80 -0.0
5,060,811 + AO353_23055 0.80 -1.0
5,060,811 + AO353_23055 0.80 -0.1
5,060,812 - AO353_23055 0.80 -0.8
5,060,812 - AO353_23055 0.80 -1.0
5,060,812 - AO353_23055 0.80 +0.1
5,060,812 - AO353_23055 0.80 +2.3
5,060,812 - AO353_23055 0.80 +1.3
5,060,812 - AO353_23055 0.80 -0.0
5,061,278 + AO353_23060 0.25 -2.5
5,061,278 + AO353_23060 0.25 +0.2
5,061,278 + AO353_23060 0.25 -2.8
5,061,365 + AO353_23060 0.32 -1.5
5,061,365 + AO353_23060 0.32 +1.2
5,061,365 + AO353_23060 0.32 -1.6
5,061,365 + AO353_23060 0.32 -0.7
5,061,366 - AO353_23060 0.32 +0.3
5,061,366 - AO353_23060 0.32 -1.8
5,061,456 + AO353_23060 0.39 -0.6
5,061,457 - AO353_23060 0.39 -0.0
5,061,457 - AO353_23060 0.39 +0.5
5,061,582 + AO353_23060 0.49 +0.7
5,061,582 + AO353_23060 0.49 +0.9
5,061,582 + AO353_23060 0.49 -0.5
5,061,582 + AO353_23060 0.49 -0.3
5,061,582 + AO353_23060 0.49 +0.4
5,061,582 + AO353_23060 0.49 -1.3
5,061,582 + AO353_23060 0.49 +1.5
5,061,582 + AO353_23060 0.49 +0.7
5,061,582 + AO353_23060 0.49 +0.0
5,061,583 - AO353_23060 0.49 +1.1
5,061,583 - AO353_23060 0.49 -0.1
5,061,583 - AO353_23060 0.49 -0.4
5,061,583 - AO353_23060 0.49 -0.8
5,061,586 + AO353_23060 0.49 -0.7
5,061,586 + AO353_23060 0.49 -1.5
5,061,793 + +1.6
5,061,793 + AO353_23060 0.66 -0.6
5,061,794 - AO353_23060 0.66 +0.5
5,061,904 + AO353_23060 0.75 +0.8
5,061,904 + AO353_23060 0.75 +0.3
5,061,905 - AO353_23060 0.75 +7.7
5,061,905 - AO353_23060 0.75 -0.5
5,061,905 - AO353_23060 0.75 +0.4
5,061,905 - AO353_23060 0.75 -0.5

Or see this region's nucleotide sequence