Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18800

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18790 and AO353_18795 are separated by 31 nucleotidesAO353_18795 and AO353_18800 are separated by 38 nucleotidesAO353_18800 and AO353_18805 are separated by 49 nucleotides AO353_18790: AO353_18790 - histidine kinase, at 4,132,139 to 4,132,522 _18790 AO353_18795: AO353_18795 - protein phosphatase, at 4,132,554 to 4,133,342 _18795 AO353_18800: AO353_18800 - chemotaxis protein CheA, at 4,133,381 to 4,135,624 _18800 AO353_18805: AO353_18805 - chemotaxis protein CheY, at 4,135,674 to 4,136,801 _18805 Position (kb) 4133 4134 4135 4136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4132.444 kb on - strand, within AO353_18790at 4132.444 kb on - strand, within AO353_18790at 4132.452 kb on - strand, within AO353_18790at 4132.452 kb on - strand, within AO353_18790at 4132.503 kb on + strandat 4132.504 kb on - strandat 4132.553 kb on + strandat 4132.554 kb on - strandat 4132.554 kb on - strandat 4132.554 kb on - strandat 4132.554 kb on - strandat 4132.554 kb on - strandat 4132.701 kb on + strand, within AO353_18795at 4132.702 kb on - strand, within AO353_18795at 4132.824 kb on + strand, within AO353_18795at 4132.824 kb on + strand, within AO353_18795at 4132.824 kb on + strand, within AO353_18795at 4132.824 kb on + strand, within AO353_18795at 4132.824 kb on + strand, within AO353_18795at 4132.824 kb on + strand, within AO353_18795at 4132.824 kb on + strand, within AO353_18795at 4132.825 kb on - strand, within AO353_18795at 4132.825 kb on - strand, within AO353_18795at 4132.825 kb on - strand, within AO353_18795at 4132.825 kb on - strand, within AO353_18795at 4132.825 kb on - strand, within AO353_18795at 4132.825 kb on - strand, within AO353_18795at 4132.825 kb on - strand, within AO353_18795at 4132.883 kb on + strand, within AO353_18795at 4133.058 kb on - strand, within AO353_18795at 4133.086 kb on + strand, within AO353_18795at 4133.086 kb on + strand, within AO353_18795at 4133.087 kb on - strand, within AO353_18795at 4133.173 kb on + strand, within AO353_18795at 4133.173 kb on + strand, within AO353_18795at 4133.174 kb on - strand, within AO353_18795at 4133.276 kb on + strandat 4133.349 kb on + strandat 4133.350 kb on - strandat 4133.350 kb on - strandat 4133.357 kb on + strandat 4133.358 kb on - strandat 4133.365 kb on + strandat 4133.365 kb on + strandat 4133.365 kb on + strandat 4133.366 kb on - strandat 4133.366 kb on - strandat 4133.366 kb on - strandat 4133.380 kb on - strandat 4133.442 kb on + strandat 4133.442 kb on + strandat 4133.442 kb on + strandat 4133.442 kb on + strandat 4133.443 kb on - strandat 4133.443 kb on - strandat 4133.532 kb on + strandat 4133.532 kb on + strandat 4133.532 kb on + strandat 4133.532 kb on + strandat 4133.532 kb on + strandat 4133.532 kb on + strandat 4133.533 kb on - strandat 4133.533 kb on - strandat 4133.533 kb on - strandat 4134.468 kb on + strand, within AO353_18800at 4134.468 kb on + strand, within AO353_18800at 4134.468 kb on + strand, within AO353_18800at 4134.468 kb on + strand, within AO353_18800at 4134.468 kb on + strand, within AO353_18800at 4134.469 kb on - strand, within AO353_18800at 4134.469 kb on - strand, within AO353_18800at 4134.523 kb on - strand, within AO353_18800at 4134.523 kb on - strand, within AO353_18800at 4134.806 kb on - strand, within AO353_18800at 4135.147 kb on + strand, within AO353_18800at 4135.147 kb on + strand, within AO353_18800at 4135.147 kb on + strand, within AO353_18800at 4135.147 kb on + strand, within AO353_18800at 4135.147 kb on + strand, within AO353_18800at 4135.148 kb on - strand, within AO353_18800at 4135.148 kb on - strand, within AO353_18800at 4135.148 kb on - strand, within AO353_18800at 4135.151 kb on + strand, within AO353_18800at 4135.151 kb on + strand, within AO353_18800at 4135.151 kb on + strand, within AO353_18800at 4135.151 kb on + strand, within AO353_18800at 4135.151 kb on + strand, within AO353_18800at 4135.152 kb on - strand, within AO353_18800at 4135.152 kb on - strand, within AO353_18800at 4135.152 kb on - strand, within AO353_18800at 4135.152 kb on - strand, within AO353_18800at 4135.152 kb on - strand, within AO353_18800at 4135.152 kb on - strand, within AO353_18800at 4135.335 kb on + strand, within AO353_18800at 4135.361 kb on + strand, within AO353_18800at 4135.361 kb on + strand, within AO353_18800at 4135.361 kb on + strand, within AO353_18800at 4135.362 kb on - strand, within AO353_18800at 4135.618 kb on + strandat 4135.619 kb on - strandat 4135.619 kb on - strandat 4135.619 kb on - strandat 4135.673 kb on + strandat 4135.673 kb on + strandat 4135.674 kb on - strandat 4135.839 kb on + strand, within AO353_18805at 4135.839 kb on + strand, within AO353_18805at 4135.840 kb on - strand, within AO353_18805at 4136.070 kb on - strand, within AO353_18805at 4136.088 kb on + strand, within AO353_18805at 4136.089 kb on - strand, within AO353_18805at 4136.244 kb on + strand, within AO353_18805at 4136.244 kb on + strand, within AO353_18805at 4136.244 kb on + strand, within AO353_18805at 4136.245 kb on - strand, within AO353_18805at 4136.245 kb on - strand, within AO353_18805at 4136.245 kb on - strand, within AO353_18805at 4136.245 kb on - strand, within AO353_18805at 4136.264 kb on + strand, within AO353_18805at 4136.264 kb on + strand, within AO353_18805at 4136.264 kb on + strand, within AO353_18805at 4136.264 kb on + strand, within AO353_18805at 4136.265 kb on - strand, within AO353_18805at 4136.265 kb on - strand, within AO353_18805at 4136.290 kb on + strand, within AO353_18805at 4136.290 kb on + strand, within AO353_18805at 4136.290 kb on + strand, within AO353_18805at 4136.538 kb on + strand, within AO353_18805at 4136.538 kb on + strand, within AO353_18805at 4136.538 kb on + strand, within AO353_18805at 4136.538 kb on + strand, within AO353_18805at 4136.539 kb on - strand, within AO353_18805at 4136.539 kb on - strand, within AO353_18805at 4136.539 kb on - strand, within AO353_18805at 4136.583 kb on + strand, within AO353_18805at 4136.584 kb on - strand, within AO353_18805

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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4,132,444 - AO353_18790 0.79 +0.3
4,132,444 - AO353_18790 0.79 +2.3
4,132,452 - AO353_18790 0.82 -0.8
4,132,452 - AO353_18790 0.82 +1.1
4,132,503 + -1.5
4,132,504 - +0.0
4,132,553 + -0.9
4,132,554 - +1.3
4,132,554 - +1.5
4,132,554 - -2.2
4,132,554 - +0.0
4,132,554 - -0.7
4,132,701 + AO353_18795 0.19 +2.1
4,132,702 - AO353_18795 0.19 -0.3
4,132,824 + AO353_18795 0.34 +1.7
4,132,824 + AO353_18795 0.34 +1.1
4,132,824 + AO353_18795 0.34 +0.6
4,132,824 + AO353_18795 0.34 -0.6
4,132,824 + AO353_18795 0.34 +1.2
4,132,824 + AO353_18795 0.34 -1.5
4,132,824 + AO353_18795 0.34 -0.3
4,132,825 - AO353_18795 0.34 -0.8
4,132,825 - AO353_18795 0.34 +0.4
4,132,825 - AO353_18795 0.34 +0.8
4,132,825 - AO353_18795 0.34 +0.0
4,132,825 - AO353_18795 0.34 +1.3
4,132,825 - AO353_18795 0.34 -0.5
4,132,825 - AO353_18795 0.34 -0.7
4,132,883 + AO353_18795 0.42 +1.2
4,133,058 - AO353_18795 0.64 +1.1
4,133,086 + AO353_18795 0.67 -1.0
4,133,086 + AO353_18795 0.67 -1.0
4,133,087 - AO353_18795 0.68 +1.9
4,133,173 + AO353_18795 0.78 +0.3
4,133,173 + AO353_18795 0.78 -2.4
4,133,174 - AO353_18795 0.79 -0.0
4,133,276 + -1.7
4,133,349 + -2.1
4,133,350 - -2.0
4,133,350 - -1.0
4,133,357 + -1.5
4,133,358 - +1.8
4,133,365 + -1.5
4,133,365 + -0.3
4,133,365 + +1.0
4,133,366 - +1.6
4,133,366 - +1.2
4,133,366 - +0.3
4,133,380 - -1.8
4,133,442 + +0.1
4,133,442 + -1.8
4,133,442 + -1.7
4,133,442 + -1.5
4,133,443 - -3.3
4,133,443 - -0.5
4,133,532 + -1.7
4,133,532 + -2.3
4,133,532 + -1.7
4,133,532 + +0.0
4,133,532 + -1.7
4,133,532 + -0.5
4,133,533 - +0.2
4,133,533 - -1.0
4,133,533 - +0.1
4,134,468 + AO353_18800 0.48 -1.4
4,134,468 + AO353_18800 0.48 +1.3
4,134,468 + AO353_18800 0.48 -0.4
4,134,468 + AO353_18800 0.48 +1.3
4,134,468 + AO353_18800 0.48 -0.1
4,134,469 - AO353_18800 0.48 -2.6
4,134,469 - AO353_18800 0.48 -1.8
4,134,523 - AO353_18800 0.51 -0.2
4,134,523 - AO353_18800 0.51 -2.8
4,134,806 - AO353_18800 0.64 -0.5
4,135,147 + AO353_18800 0.79 -1.0
4,135,147 + AO353_18800 0.79 -0.9
4,135,147 + AO353_18800 0.79 -2.0
4,135,147 + AO353_18800 0.79 -1.2
4,135,147 + AO353_18800 0.79 -0.8
4,135,148 - AO353_18800 0.79 -2.2
4,135,148 - AO353_18800 0.79 +0.6
4,135,148 - AO353_18800 0.79 +0.2
4,135,151 + AO353_18800 0.79 -0.8
4,135,151 + AO353_18800 0.79 -1.2
4,135,151 + AO353_18800 0.79 -0.8
4,135,151 + AO353_18800 0.79 -0.7
4,135,151 + AO353_18800 0.79 +0.5
4,135,152 - AO353_18800 0.79 -1.1
4,135,152 - AO353_18800 0.79 -0.7
4,135,152 - AO353_18800 0.79 +0.8
4,135,152 - AO353_18800 0.79 -1.6
4,135,152 - AO353_18800 0.79 -2.1
4,135,152 - AO353_18800 0.79 +0.8
4,135,335 + AO353_18800 0.87 -1.2
4,135,361 + AO353_18800 0.88 +0.4
4,135,361 + AO353_18800 0.88 -1.9
4,135,361 + AO353_18800 0.88 -1.1
4,135,362 - AO353_18800 0.88 +0.8
4,135,618 + +0.3
4,135,619 - -1.7
4,135,619 - -0.5
4,135,619 - -1.0
4,135,673 + +1.3
4,135,673 + -0.5
4,135,674 - +0.3
4,135,839 + AO353_18805 0.15 -0.7
4,135,839 + AO353_18805 0.15 +1.3
4,135,840 - AO353_18805 0.15 -1.6
4,136,070 - AO353_18805 0.35 -1.4
4,136,088 + AO353_18805 0.37 +0.3
4,136,089 - AO353_18805 0.37 -2.2
4,136,244 + AO353_18805 0.51 +2.1
4,136,244 + AO353_18805 0.51 -1.1
4,136,244 + AO353_18805 0.51 +0.8
4,136,245 - AO353_18805 0.51 +0.8
4,136,245 - AO353_18805 0.51 -1.7
4,136,245 - AO353_18805 0.51 +1.3
4,136,245 - AO353_18805 0.51 +0.0
4,136,264 + AO353_18805 0.52 +0.3
4,136,264 + AO353_18805 0.52 -1.0
4,136,264 + AO353_18805 0.52 -1.2
4,136,264 + AO353_18805 0.52 +0.0
4,136,265 - AO353_18805 0.52 +0.3
4,136,265 - AO353_18805 0.52 +0.5
4,136,290 + AO353_18805 0.55 -0.9
4,136,290 + AO353_18805 0.55 -0.2
4,136,290 + AO353_18805 0.55 +1.5
4,136,538 + AO353_18805 0.77 -0.7
4,136,538 + AO353_18805 0.77 +0.0
4,136,538 + AO353_18805 0.77 -2.9
4,136,538 + AO353_18805 0.77 -1.6
4,136,539 - AO353_18805 0.77 -0.2
4,136,539 - AO353_18805 0.77 -0.1
4,136,539 - AO353_18805 0.77 -0.2
4,136,583 + AO353_18805 0.81 -0.1
4,136,584 - AO353_18805 0.81 +0.1

Or see this region's nucleotide sequence