Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16730

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16720 and AO353_16725 are separated by 124 nucleotidesAO353_16725 and AO353_16730 overlap by 4 nucleotidesAO353_16730 and AO353_16735 overlap by 1 nucleotides AO353_16720: AO353_16720 - phage tail protein, at 3,707,737 to 3,708,765 _16720 AO353_16725: AO353_16725 - hypothetical protein, at 3,708,890 to 3,709,474 _16725 AO353_16730: AO353_16730 - hypothetical protein, at 3,709,471 to 3,709,653 _16730 AO353_16735: AO353_16735 - phage tail protein, at 3,709,653 to 3,711,149 _16735 Position (kb) 3709 3710Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3708.575 kb on + strand, within AO353_16720at 3708.623 kb on + strand, within AO353_16720at 3708.624 kb on - strand, within AO353_16720at 3708.624 kb on - strand, within AO353_16720at 3708.652 kb on - strand, within AO353_16720at 3708.705 kb on + strandat 3708.705 kb on + strandat 3708.705 kb on + strandat 3708.705 kb on + strandat 3708.705 kb on + strandat 3708.705 kb on + strandat 3708.705 kb on + strandat 3708.705 kb on + strandat 3708.706 kb on - strandat 3708.706 kb on - strandat 3708.706 kb on - strandat 3708.706 kb on - strandat 3708.706 kb on - strandat 3708.706 kb on - strandat 3708.850 kb on + strandat 3708.851 kb on - strandat 3708.870 kb on + strandat 3708.871 kb on - strandat 3708.963 kb on + strand, within AO353_16725at 3708.963 kb on + strand, within AO353_16725at 3708.963 kb on + strand, within AO353_16725at 3708.963 kb on + strand, within AO353_16725at 3708.964 kb on - strand, within AO353_16725at 3708.964 kb on - strand, within AO353_16725at 3708.964 kb on - strand, within AO353_16725at 3708.964 kb on - strand, within AO353_16725at 3708.964 kb on - strand, within AO353_16725at 3709.013 kb on + strand, within AO353_16725at 3709.013 kb on + strand, within AO353_16725at 3709.014 kb on - strand, within AO353_16725at 3709.014 kb on - strand, within AO353_16725at 3709.014 kb on - strand, within AO353_16725at 3709.014 kb on - strand, within AO353_16725at 3709.123 kb on + strand, within AO353_16725at 3709.124 kb on - strand, within AO353_16725at 3709.124 kb on - strand, within AO353_16725at 3709.124 kb on - strand, within AO353_16725at 3709.124 kb on - strand, within AO353_16725at 3709.217 kb on + strand, within AO353_16725at 3709.218 kb on - strand, within AO353_16725at 3709.262 kb on + strand, within AO353_16725at 3709.464 kb on + strandat 3709.464 kb on + strandat 3709.465 kb on - strandat 3709.465 kb on - strandat 3709.465 kb on - strandat 3709.465 kb on - strandat 3709.465 kb on - strandat 3709.465 kb on - strandat 3709.465 kb on - strandat 3709.465 kb on - strandat 3709.611 kb on + strand, within AO353_16730at 3709.651 kb on + strandat 3709.704 kb on + strandat 3709.705 kb on - strandat 3709.705 kb on - strandat 3709.705 kb on - strandat 3709.878 kb on + strand, within AO353_16735at 3709.878 kb on + strand, within AO353_16735at 3709.878 kb on + strand, within AO353_16735at 3709.879 kb on - strand, within AO353_16735at 3709.879 kb on - strand, within AO353_16735at 3709.879 kb on - strand, within AO353_16735at 3710.010 kb on + strand, within AO353_16735at 3710.010 kb on + strand, within AO353_16735at 3710.010 kb on + strand, within AO353_16735at 3710.010 kb on + strand, within AO353_16735at 3710.011 kb on - strand, within AO353_16735at 3710.011 kb on - strand, within AO353_16735at 3710.011 kb on - strand, within AO353_16735at 3710.011 kb on - strand, within AO353_16735at 3710.011 kb on - strand, within AO353_16735at 3710.294 kb on - strand, within AO353_16735at 3710.369 kb on + strand, within AO353_16735at 3710.370 kb on - strand, within AO353_16735at 3710.370 kb on - strand, within AO353_16735at 3710.370 kb on - strand, within AO353_16735at 3710.370 kb on - strand, within AO353_16735at 3710.370 kb on - strand, within AO353_16735at 3710.439 kb on + strand, within AO353_16735at 3710.439 kb on + strand, within AO353_16735at 3710.439 kb on + strand, within AO353_16735at 3710.439 kb on + strand, within AO353_16735at 3710.440 kb on - strand, within AO353_16735at 3710.440 kb on - strand, within AO353_16735at 3710.440 kb on - strand, within AO353_16735at 3710.440 kb on - strand, within AO353_16735at 3710.440 kb on - strand, within AO353_16735at 3710.440 kb on - strand, within AO353_16735

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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3,708,575 + AO353_16720 0.81 -0.4
3,708,623 + AO353_16720 0.86 +1.8
3,708,624 - AO353_16720 0.86 +1.9
3,708,624 - AO353_16720 0.86 -0.3
3,708,652 - AO353_16720 0.89 -0.2
3,708,705 + -3.3
3,708,705 + -0.5
3,708,705 + -2.3
3,708,705 + -0.3
3,708,705 + +2.0
3,708,705 + +0.9
3,708,705 + +0.2
3,708,705 + +1.3
3,708,706 - +1.1
3,708,706 - -1.3
3,708,706 - +0.0
3,708,706 - -0.6
3,708,706 - +1.0
3,708,706 - -0.3
3,708,850 + -0.8
3,708,851 - +0.5
3,708,870 + +1.1
3,708,871 - +0.3
3,708,963 + AO353_16725 0.12 +0.5
3,708,963 + AO353_16725 0.12 +0.1
3,708,963 + AO353_16725 0.12 +0.7
3,708,963 + AO353_16725 0.12 +4.6
3,708,964 - AO353_16725 0.13 +1.2
3,708,964 - AO353_16725 0.13 -0.3
3,708,964 - AO353_16725 0.13 -2.1
3,708,964 - AO353_16725 0.13 -1.4
3,708,964 - AO353_16725 0.13 +0.2
3,709,013 + AO353_16725 0.21 -0.5
3,709,013 + AO353_16725 0.21 -0.1
3,709,014 - AO353_16725 0.21 -0.8
3,709,014 - AO353_16725 0.21 -0.5
3,709,014 - AO353_16725 0.21 -1.7
3,709,014 - AO353_16725 0.21 +0.6
3,709,123 + AO353_16725 0.40 +2.5
3,709,124 - AO353_16725 0.40 +0.4
3,709,124 - AO353_16725 0.40 +0.5
3,709,124 - AO353_16725 0.40 +0.5
3,709,124 - AO353_16725 0.40 +2.2
3,709,217 + AO353_16725 0.56 +0.2
3,709,218 - AO353_16725 0.56 -0.2
3,709,262 + AO353_16725 0.64 +0.6
3,709,464 + -1.5
3,709,464 + -0.7
3,709,465 - -0.3
3,709,465 - -0.5
3,709,465 - +1.0
3,709,465 - +0.9
3,709,465 - +0.5
3,709,465 - +0.3
3,709,465 - +0.6
3,709,465 - -0.3
3,709,611 + AO353_16730 0.77 -0.6
3,709,651 + +0.2
3,709,704 + +0.4
3,709,705 - -1.1
3,709,705 - +0.5
3,709,705 - -0.5
3,709,878 + AO353_16735 0.15 +0.3
3,709,878 + AO353_16735 0.15 -0.3
3,709,878 + AO353_16735 0.15 +0.8
3,709,879 - AO353_16735 0.15 +0.4
3,709,879 - AO353_16735 0.15 -0.7
3,709,879 - AO353_16735 0.15 -0.3
3,710,010 + AO353_16735 0.24 +0.7
3,710,010 + AO353_16735 0.24 +1.3
3,710,010 + AO353_16735 0.24 -0.0
3,710,010 + AO353_16735 0.24 +0.3
3,710,011 - AO353_16735 0.24 -0.1
3,710,011 - AO353_16735 0.24 +0.5
3,710,011 - AO353_16735 0.24 +0.2
3,710,011 - AO353_16735 0.24 +2.5
3,710,011 - AO353_16735 0.24 -1.4
3,710,294 - AO353_16735 0.43 +0.9
3,710,369 + AO353_16735 0.48 +2.9
3,710,370 - AO353_16735 0.48 -0.3
3,710,370 - AO353_16735 0.48 -0.3
3,710,370 - AO353_16735 0.48 -0.5
3,710,370 - AO353_16735 0.48 +2.2
3,710,370 - AO353_16735 0.48 -1.1
3,710,439 + AO353_16735 0.53 +1.7
3,710,439 + AO353_16735 0.53 -1.0
3,710,439 + AO353_16735 0.53 -0.5
3,710,439 + AO353_16735 0.53 +1.0
3,710,440 - AO353_16735 0.53 +0.2
3,710,440 - AO353_16735 0.53 +1.5
3,710,440 - AO353_16735 0.53 +1.5
3,710,440 - AO353_16735 0.53 -2.2
3,710,440 - AO353_16735 0.53 +1.3
3,710,440 - AO353_16735 0.53 +0.5

Or see this region's nucleotide sequence