Experiment: 4C survival; 672 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16720 and AO353_16725 are separated by 124 nucleotides AO353_16725 and AO353_16730 overlap by 4 nucleotides AO353_16730 and AO353_16735 overlap by 1 nucleotides
AO353_16720: AO353_16720 - phage tail protein, at 3,707,737 to 3,708,765
_16720
AO353_16725: AO353_16725 - hypothetical protein, at 3,708,890 to 3,709,474
_16725
AO353_16730: AO353_16730 - hypothetical protein, at 3,709,471 to 3,709,653
_16730
AO353_16735: AO353_16735 - phage tail protein, at 3,709,653 to 3,711,149
_16735
Position (kb)
3709
3710 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3708.575 kb on + strand, within AO353_16720 at 3708.623 kb on + strand, within AO353_16720 at 3708.624 kb on - strand, within AO353_16720 at 3708.624 kb on - strand, within AO353_16720 at 3708.652 kb on - strand, within AO353_16720 at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.705 kb on + strand at 3708.706 kb on - strand at 3708.706 kb on - strand at 3708.706 kb on - strand at 3708.706 kb on - strand at 3708.706 kb on - strand at 3708.706 kb on - strand at 3708.850 kb on + strand at 3708.851 kb on - strand at 3708.870 kb on + strand at 3708.871 kb on - strand at 3708.963 kb on + strand, within AO353_16725 at 3708.963 kb on + strand, within AO353_16725 at 3708.963 kb on + strand, within AO353_16725 at 3708.963 kb on + strand, within AO353_16725 at 3708.964 kb on - strand, within AO353_16725 at 3708.964 kb on - strand, within AO353_16725 at 3708.964 kb on - strand, within AO353_16725 at 3708.964 kb on - strand, within AO353_16725 at 3708.964 kb on - strand, within AO353_16725 at 3709.013 kb on + strand, within AO353_16725 at 3709.013 kb on + strand, within AO353_16725 at 3709.014 kb on - strand, within AO353_16725 at 3709.014 kb on - strand, within AO353_16725 at 3709.014 kb on - strand, within AO353_16725 at 3709.014 kb on - strand, within AO353_16725 at 3709.123 kb on + strand, within AO353_16725 at 3709.124 kb on - strand, within AO353_16725 at 3709.124 kb on - strand, within AO353_16725 at 3709.124 kb on - strand, within AO353_16725 at 3709.124 kb on - strand, within AO353_16725 at 3709.217 kb on + strand, within AO353_16725 at 3709.218 kb on - strand, within AO353_16725 at 3709.262 kb on + strand, within AO353_16725 at 3709.464 kb on + strand at 3709.464 kb on + strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.465 kb on - strand at 3709.611 kb on + strand, within AO353_16730 at 3709.651 kb on + strand at 3709.704 kb on + strand at 3709.705 kb on - strand at 3709.705 kb on - strand at 3709.705 kb on - strand at 3709.878 kb on + strand, within AO353_16735 at 3709.878 kb on + strand, within AO353_16735 at 3709.878 kb on + strand, within AO353_16735 at 3709.879 kb on - strand, within AO353_16735 at 3709.879 kb on - strand, within AO353_16735 at 3709.879 kb on - strand, within AO353_16735 at 3710.010 kb on + strand, within AO353_16735 at 3710.010 kb on + strand, within AO353_16735 at 3710.010 kb on + strand, within AO353_16735 at 3710.010 kb on + strand, within AO353_16735 at 3710.011 kb on - strand, within AO353_16735 at 3710.011 kb on - strand, within AO353_16735 at 3710.011 kb on - strand, within AO353_16735 at 3710.011 kb on - strand, within AO353_16735 at 3710.011 kb on - strand, within AO353_16735 at 3710.294 kb on - strand, within AO353_16735 at 3710.369 kb on + strand, within AO353_16735 at 3710.370 kb on - strand, within AO353_16735 at 3710.370 kb on - strand, within AO353_16735 at 3710.370 kb on - strand, within AO353_16735 at 3710.370 kb on - strand, within AO353_16735 at 3710.370 kb on - strand, within AO353_16735 at 3710.439 kb on + strand, within AO353_16735 at 3710.439 kb on + strand, within AO353_16735 at 3710.439 kb on + strand, within AO353_16735 at 3710.439 kb on + strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735 at 3710.440 kb on - strand, within AO353_16735
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 672 hrs remove 3,708,575 + AO353_16720 0.81 -0.4 3,708,623 + AO353_16720 0.86 +1.8 3,708,624 - AO353_16720 0.86 +1.9 3,708,624 - AO353_16720 0.86 -0.3 3,708,652 - AO353_16720 0.89 -0.2 3,708,705 + -3.3 3,708,705 + -0.5 3,708,705 + -2.3 3,708,705 + -0.3 3,708,705 + +2.0 3,708,705 + +0.9 3,708,705 + +0.2 3,708,705 + +1.3 3,708,706 - +1.1 3,708,706 - -1.3 3,708,706 - +0.0 3,708,706 - -0.6 3,708,706 - +1.0 3,708,706 - -0.3 3,708,850 + -0.8 3,708,851 - +0.5 3,708,870 + +1.1 3,708,871 - +0.3 3,708,963 + AO353_16725 0.12 +0.5 3,708,963 + AO353_16725 0.12 +0.1 3,708,963 + AO353_16725 0.12 +0.7 3,708,963 + AO353_16725 0.12 +4.6 3,708,964 - AO353_16725 0.13 +1.2 3,708,964 - AO353_16725 0.13 -0.3 3,708,964 - AO353_16725 0.13 -2.1 3,708,964 - AO353_16725 0.13 -1.4 3,708,964 - AO353_16725 0.13 +0.2 3,709,013 + AO353_16725 0.21 -0.5 3,709,013 + AO353_16725 0.21 -0.1 3,709,014 - AO353_16725 0.21 -0.8 3,709,014 - AO353_16725 0.21 -0.5 3,709,014 - AO353_16725 0.21 -1.7 3,709,014 - AO353_16725 0.21 +0.6 3,709,123 + AO353_16725 0.40 +2.5 3,709,124 - AO353_16725 0.40 +0.4 3,709,124 - AO353_16725 0.40 +0.5 3,709,124 - AO353_16725 0.40 +0.5 3,709,124 - AO353_16725 0.40 +2.2 3,709,217 + AO353_16725 0.56 +0.2 3,709,218 - AO353_16725 0.56 -0.2 3,709,262 + AO353_16725 0.64 +0.6 3,709,464 + -1.5 3,709,464 + -0.7 3,709,465 - -0.3 3,709,465 - -0.5 3,709,465 - +1.0 3,709,465 - +0.9 3,709,465 - +0.5 3,709,465 - +0.3 3,709,465 - +0.6 3,709,465 - -0.3 3,709,611 + AO353_16730 0.77 -0.6 3,709,651 + +0.2 3,709,704 + +0.4 3,709,705 - -1.1 3,709,705 - +0.5 3,709,705 - -0.5 3,709,878 + AO353_16735 0.15 +0.3 3,709,878 + AO353_16735 0.15 -0.3 3,709,878 + AO353_16735 0.15 +0.8 3,709,879 - AO353_16735 0.15 +0.4 3,709,879 - AO353_16735 0.15 -0.7 3,709,879 - AO353_16735 0.15 -0.3 3,710,010 + AO353_16735 0.24 +0.7 3,710,010 + AO353_16735 0.24 +1.3 3,710,010 + AO353_16735 0.24 -0.0 3,710,010 + AO353_16735 0.24 +0.3 3,710,011 - AO353_16735 0.24 -0.1 3,710,011 - AO353_16735 0.24 +0.5 3,710,011 - AO353_16735 0.24 +0.2 3,710,011 - AO353_16735 0.24 +2.5 3,710,011 - AO353_16735 0.24 -1.4 3,710,294 - AO353_16735 0.43 +0.9 3,710,369 + AO353_16735 0.48 +2.9 3,710,370 - AO353_16735 0.48 -0.3 3,710,370 - AO353_16735 0.48 -0.3 3,710,370 - AO353_16735 0.48 -0.5 3,710,370 - AO353_16735 0.48 +2.2 3,710,370 - AO353_16735 0.48 -1.1 3,710,439 + AO353_16735 0.53 +1.7 3,710,439 + AO353_16735 0.53 -1.0 3,710,439 + AO353_16735 0.53 -0.5 3,710,439 + AO353_16735 0.53 +1.0 3,710,440 - AO353_16735 0.53 +0.2 3,710,440 - AO353_16735 0.53 +1.5 3,710,440 - AO353_16735 0.53 +1.5 3,710,440 - AO353_16735 0.53 -2.2 3,710,440 - AO353_16735 0.53 +1.3 3,710,440 - AO353_16735 0.53 +0.5
Or see this region's nucleotide sequence