Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16325

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16320 and AO353_16325 are separated by 281 nucleotidesAO353_16325 and AO353_16330 overlap by 1 nucleotidesAO353_16330 and AO353_16335 are separated by 32 nucleotides AO353_16320: AO353_16320 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 3,623,638 to 3,624,312 _16320 AO353_16325: AO353_16325 - hypothetical protein, at 3,624,594 to 3,624,902 _16325 AO353_16330: AO353_16330 - hypothetical protein, at 3,624,902 to 3,625,762 _16330 AO353_16335: AO353_16335 - 2-methylisocitrate lyase, at 3,625,795 to 3,626,616 _16335 Position (kb) 3624 3625Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 3623.596 kb on + strandat 3623.596 kb on + strandat 3623.597 kb on - strandat 3623.597 kb on - strandat 3623.597 kb on - strandat 3623.597 kb on - strandat 3623.597 kb on - strandat 3623.597 kb on - strandat 3623.597 kb on - strandat 3624.275 kb on - strandat 3624.397 kb on + strandat 3624.397 kb on + strandat 3624.398 kb on - strandat 3624.410 kb on - strandat 3624.495 kb on + strandat 3624.520 kb on + strandat 3624.520 kb on + strandat 3624.520 kb on + strandat 3624.520 kb on + strandat 3624.520 kb on + strandat 3624.521 kb on - strandat 3624.521 kb on - strandat 3624.521 kb on - strandat 3624.521 kb on - strandat 3624.521 kb on - strandat 3624.521 kb on - strandat 3624.521 kb on - strandat 3624.521 kb on - strandat 3624.521 kb on - strandat 3624.521 kb on - strandat 3624.521 kb on - strandat 3624.524 kb on + strandat 3624.524 kb on + strandat 3624.525 kb on - strandat 3624.525 kb on - strandat 3624.589 kb on + strandat 3624.589 kb on + strandat 3624.589 kb on + strandat 3624.589 kb on + strandat 3624.589 kb on + strandat 3624.589 kb on + strandat 3624.589 kb on + strandat 3624.590 kb on - strandat 3624.590 kb on - strandat 3624.590 kb on - strandat 3624.590 kb on - strandat 3624.590 kb on - strandat 3624.590 kb on - strandat 3624.590 kb on - strandat 3624.590 kb on - strandat 3624.590 kb on - strandat 3624.590 kb on - strandat 3624.590 kb on - strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.593 kb on + strandat 3624.594 kb on - strandat 3624.594 kb on - strandat 3624.594 kb on - strandat 3624.594 kb on - strandat 3624.594 kb on - strandat 3624.594 kb on - strandat 3624.594 kb on - strandat 3624.594 kb on - strandat 3624.594 kb on - strandat 3624.594 kb on - strandat 3624.601 kb on + strandat 3624.602 kb on - strandat 3624.602 kb on - strandat 3624.624 kb on + strandat 3624.792 kb on + strand, within AO353_16325at 3624.792 kb on + strand, within AO353_16325at 3624.792 kb on + strand, within AO353_16325at 3624.792 kb on + strand, within AO353_16325at 3624.792 kb on + strand, within AO353_16325at 3624.792 kb on + strand, within AO353_16325at 3624.793 kb on - strand, within AO353_16325at 3624.793 kb on - strand, within AO353_16325at 3624.793 kb on - strand, within AO353_16325at 3624.793 kb on - strand, within AO353_16325at 3624.793 kb on - strand, within AO353_16325at 3624.793 kb on - strand, within AO353_16325at 3624.837 kb on + strand, within AO353_16325at 3624.837 kb on + strand, within AO353_16325at 3624.837 kb on + strand, within AO353_16325at 3624.837 kb on + strand, within AO353_16325at 3624.837 kb on + strand, within AO353_16325at 3624.837 kb on + strand, within AO353_16325at 3624.837 kb on + strand, within AO353_16325at 3624.837 kb on + strand, within AO353_16325at 3624.838 kb on - strand, within AO353_16325at 3624.914 kb on + strandat 3624.914 kb on + strandat 3624.915 kb on - strandat 3624.915 kb on - strandat 3624.915 kb on - strandat 3624.915 kb on - strandat 3624.915 kb on - strandat 3624.915 kb on - strandat 3624.917 kb on + strandat 3624.917 kb on + strandat 3624.917 kb on + strandat 3624.917 kb on + strandat 3624.917 kb on + strandat 3624.918 kb on - strandat 3624.918 kb on - strandat 3624.918 kb on - strandat 3624.918 kb on - strandat 3624.918 kb on - strandat 3624.918 kb on - strandat 3624.919 kb on - strandat 3624.959 kb on + strandat 3624.959 kb on + strandat 3624.960 kb on - strandat 3624.966 kb on - strandat 3625.004 kb on + strand, within AO353_16330at 3625.004 kb on + strand, within AO353_16330at 3625.005 kb on - strand, within AO353_16330at 3625.046 kb on + strand, within AO353_16330at 3625.046 kb on + strand, within AO353_16330at 3625.046 kb on + strand, within AO353_16330at 3625.046 kb on + strand, within AO353_16330at 3625.046 kb on + strand, within AO353_16330at 3625.046 kb on + strand, within AO353_16330at 3625.047 kb on - strand, within AO353_16330at 3625.047 kb on - strand, within AO353_16330at 3625.282 kb on + strand, within AO353_16330at 3625.283 kb on - strand, within AO353_16330at 3625.502 kb on - strand, within AO353_16330at 3625.502 kb on - strand, within AO353_16330at 3625.502 kb on - strand, within AO353_16330at 3625.502 kb on - strand, within AO353_16330at 3625.555 kb on + strand, within AO353_16330at 3625.555 kb on + strand, within AO353_16330at 3625.555 kb on + strand, within AO353_16330at 3625.556 kb on - strand, within AO353_16330at 3625.556 kb on - strand, within AO353_16330at 3625.556 kb on - strand, within AO353_16330at 3625.556 kb on - strand, within AO353_16330at 3625.556 kb on - strand, within AO353_16330at 3625.556 kb on - strand, within AO353_16330at 3625.556 kb on - strand, within AO353_16330at 3625.616 kb on + strand, within AO353_16330at 3625.616 kb on + strand, within AO353_16330at 3625.616 kb on + strand, within AO353_16330at 3625.616 kb on + strand, within AO353_16330at 3625.616 kb on + strand, within AO353_16330at 3625.616 kb on + strand, within AO353_16330at 3625.616 kb on + strand, within AO353_16330at 3625.616 kb on + strand, within AO353_16330at 3625.616 kb on + strand, within AO353_16330at 3625.616 kb on + strand, within AO353_16330at 3625.616 kb on + strand, within AO353_16330at 3625.617 kb on - strand, within AO353_16330at 3625.617 kb on - strand, within AO353_16330at 3625.617 kb on - strand, within AO353_16330at 3625.617 kb on - strand, within AO353_16330at 3625.617 kb on - strand, within AO353_16330at 3625.617 kb on - strand, within AO353_16330at 3625.617 kb on - strand, within AO353_16330at 3625.617 kb on - strand, within AO353_16330at 3625.617 kb on - strand, within AO353_16330at 3625.618 kb on + strand, within AO353_16330at 3625.618 kb on + strand, within AO353_16330at 3625.618 kb on + strand, within AO353_16330at 3625.618 kb on + strand, within AO353_16330at 3625.618 kb on + strand, within AO353_16330at 3625.619 kb on - strand, within AO353_16330at 3625.619 kb on - strand, within AO353_16330at 3625.619 kb on - strand, within AO353_16330at 3625.619 kb on - strand, within AO353_16330at 3625.619 kb on - strand, within AO353_16330at 3625.619 kb on - strand, within AO353_16330at 3625.675 kb on + strand, within AO353_16330at 3625.676 kb on - strand, within AO353_16330at 3625.676 kb on - strand, within AO353_16330at 3625.722 kb on + strandat 3625.722 kb on + strandat 3625.722 kb on + strandat 3625.722 kb on + strandat 3625.722 kb on + strandat 3625.722 kb on + strandat 3625.722 kb on + strandat 3625.722 kb on + strandat 3625.723 kb on - strandat 3625.723 kb on - strandat 3625.723 kb on - strandat 3625.723 kb on - strandat 3625.723 kb on - strandat 3625.723 kb on - strandat 3625.723 kb on - strandat 3625.723 kb on - strandat 3625.723 kb on - strandat 3625.724 kb on + strandat 3625.724 kb on + strandat 3625.724 kb on + strandat 3625.724 kb on + strandat 3625.724 kb on + strandat 3625.725 kb on - strandat 3625.725 kb on - strandat 3625.725 kb on - strandat 3625.725 kb on - strandat 3625.725 kb on - strandat 3625.725 kb on - strandat 3625.725 kb on - strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.726 kb on + strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.727 kb on - strandat 3625.812 kb on + strandat 3625.835 kb on + strandat 3625.836 kb on - strandat 3625.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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3,623,596 + -0.1
3,623,596 + +0.8
3,623,597 - -0.8
3,623,597 - -1.0
3,623,597 - +0.9
3,623,597 - -0.5
3,623,597 - -0.3
3,623,597 - +0.5
3,623,597 - +0.9
3,624,275 - +0.2
3,624,397 + +0.9
3,624,397 + -1.6
3,624,398 - +1.2
3,624,410 - -0.3
3,624,495 + -1.2
3,624,520 + -1.2
3,624,520 + -1.7
3,624,520 + -0.7
3,624,520 + -2.1
3,624,520 + -1.6
3,624,521 - +0.9
3,624,521 - -0.3
3,624,521 - +0.9
3,624,521 - +1.2
3,624,521 - +0.6
3,624,521 - +0.9
3,624,521 - -1.2
3,624,521 - +0.5
3,624,521 - +8.3
3,624,521 - +1.3
3,624,521 - +0.7
3,624,524 + -0.1
3,624,524 + -1.0
3,624,525 - +1.2
3,624,525 - +1.1
3,624,589 + +0.1
3,624,589 + +0.2
3,624,589 + -0.4
3,624,589 + -0.7
3,624,589 + +0.7
3,624,589 + +1.5
3,624,589 + -0.5
3,624,590 - +1.6
3,624,590 - -0.9
3,624,590 - +0.8
3,624,590 - +0.2
3,624,590 - +2.3
3,624,590 - +2.0
3,624,590 - +2.0
3,624,590 - +0.4
3,624,590 - -1.0
3,624,590 - -0.8
3,624,590 - +0.2
3,624,593 + +0.7
3,624,593 + +0.6
3,624,593 + +0.4
3,624,593 + +0.8
3,624,593 + +1.2
3,624,593 + -1.5
3,624,593 + +0.4
3,624,593 + -1.1
3,624,593 + +0.2
3,624,593 + +0.7
3,624,593 + +0.5
3,624,593 + -0.3
3,624,593 + -0.6
3,624,594 - +1.3
3,624,594 - +1.5
3,624,594 - +2.5
3,624,594 - +0.4
3,624,594 - +1.0
3,624,594 - +0.4
3,624,594 - -0.5
3,624,594 - -0.1
3,624,594 - +1.9
3,624,594 - +0.2
3,624,601 + +1.0
3,624,602 - -1.2
3,624,602 - +1.0
3,624,624 + +2.2
3,624,792 + AO353_16325 0.64 +1.2
3,624,792 + AO353_16325 0.64 +1.3
3,624,792 + AO353_16325 0.64 +1.0
3,624,792 + AO353_16325 0.64 +0.8
3,624,792 + AO353_16325 0.64 -0.7
3,624,792 + AO353_16325 0.64 +1.2
3,624,793 - AO353_16325 0.64 +1.5
3,624,793 - AO353_16325 0.64 +1.2
3,624,793 - AO353_16325 0.64 +1.7
3,624,793 - AO353_16325 0.64 +0.2
3,624,793 - AO353_16325 0.64 +0.7
3,624,793 - AO353_16325 0.64 +1.7
3,624,837 + AO353_16325 0.79 -0.3
3,624,837 + AO353_16325 0.79 +0.8
3,624,837 + AO353_16325 0.79 -0.3
3,624,837 + AO353_16325 0.79 +0.4
3,624,837 + AO353_16325 0.79 +1.0
3,624,837 + AO353_16325 0.79 +0.3
3,624,837 + AO353_16325 0.79 +0.6
3,624,837 + AO353_16325 0.79 +1.3
3,624,838 - AO353_16325 0.79 +0.1
3,624,914 + -0.1
3,624,914 + +0.8
3,624,915 - +0.1
3,624,915 - -2.2
3,624,915 - +0.7
3,624,915 - +1.5
3,624,915 - +1.0
3,624,915 - +0.3
3,624,917 + -0.2
3,624,917 + -1.6
3,624,917 + -0.8
3,624,917 + -0.2
3,624,917 + +0.5
3,624,918 - -0.4
3,624,918 - +1.1
3,624,918 - +0.9
3,624,918 - +0.2
3,624,918 - -0.8
3,624,918 - +0.4
3,624,919 - -0.2
3,624,959 + +0.2
3,624,959 + -0.1
3,624,960 - +0.8
3,624,966 - -0.5
3,625,004 + AO353_16330 0.12 +0.5
3,625,004 + AO353_16330 0.12 +1.5
3,625,005 - AO353_16330 0.12 +0.4
3,625,046 + AO353_16330 0.17 +0.3
3,625,046 + AO353_16330 0.17 +2.2
3,625,046 + AO353_16330 0.17 +0.4
3,625,046 + AO353_16330 0.17 +0.2
3,625,046 + AO353_16330 0.17 +0.2
3,625,046 + AO353_16330 0.17 +0.7
3,625,047 - AO353_16330 0.17 +1.1
3,625,047 - AO353_16330 0.17 +0.0
3,625,282 + AO353_16330 0.44 -0.1
3,625,283 - AO353_16330 0.44 +0.1
3,625,502 - AO353_16330 0.70 +1.4
3,625,502 - AO353_16330 0.70 +0.2
3,625,502 - AO353_16330 0.70 +0.5
3,625,502 - AO353_16330 0.70 -1.0
3,625,555 + AO353_16330 0.76 -0.6
3,625,555 + AO353_16330 0.76 -0.3
3,625,555 + AO353_16330 0.76 +0.1
3,625,556 - AO353_16330 0.76 -0.3
3,625,556 - AO353_16330 0.76 -0.6
3,625,556 - AO353_16330 0.76 -1.1
3,625,556 - AO353_16330 0.76 +0.4
3,625,556 - AO353_16330 0.76 -0.1
3,625,556 - AO353_16330 0.76 -0.3
3,625,556 - AO353_16330 0.76 -0.4
3,625,616 + AO353_16330 0.83 +0.0
3,625,616 + AO353_16330 0.83 -1.1
3,625,616 + AO353_16330 0.83 +1.3
3,625,616 + AO353_16330 0.83 -0.3
3,625,616 + AO353_16330 0.83 +0.0
3,625,616 + AO353_16330 0.83 +0.6
3,625,616 + AO353_16330 0.83 +1.2
3,625,616 + AO353_16330 0.83 -2.0
3,625,616 + AO353_16330 0.83 -0.6
3,625,616 + AO353_16330 0.83 -0.8
3,625,616 + AO353_16330 0.83 +0.7
3,625,617 - AO353_16330 0.83 -0.7
3,625,617 - AO353_16330 0.83 -1.3
3,625,617 - AO353_16330 0.83 +0.3
3,625,617 - AO353_16330 0.83 +0.2
3,625,617 - AO353_16330 0.83 -0.7
3,625,617 - AO353_16330 0.83 +0.5
3,625,617 - AO353_16330 0.83 +0.3
3,625,617 - AO353_16330 0.83 +0.5
3,625,617 - AO353_16330 0.83 -0.1
3,625,618 + AO353_16330 0.83 -0.3
3,625,618 + AO353_16330 0.83 -0.9
3,625,618 + AO353_16330 0.83 -0.7
3,625,618 + AO353_16330 0.83 -0.1
3,625,618 + AO353_16330 0.83 -1.0
3,625,619 - AO353_16330 0.83 -1.4
3,625,619 - AO353_16330 0.83 -1.6
3,625,619 - AO353_16330 0.83 -1.4
3,625,619 - AO353_16330 0.83 -0.2
3,625,619 - AO353_16330 0.83 +2.1
3,625,619 - AO353_16330 0.83 -0.8
3,625,675 + AO353_16330 0.90 -1.3
3,625,676 - AO353_16330 0.90 +7.7
3,625,676 - AO353_16330 0.90 +1.0
3,625,722 + -1.6
3,625,722 + +0.1
3,625,722 + -0.4
3,625,722 + -1.3
3,625,722 + -0.9
3,625,722 + +0.5
3,625,722 + -0.6
3,625,722 + +0.9
3,625,723 - +0.8
3,625,723 - -0.4
3,625,723 - +1.7
3,625,723 - +0.7
3,625,723 - -1.0
3,625,723 - +1.2
3,625,723 - +0.2
3,625,723 - +0.2
3,625,723 - +1.2
3,625,724 + -1.4
3,625,724 + +1.3
3,625,724 + +1.1
3,625,724 + +0.5
3,625,724 + -0.2
3,625,725 - +1.7
3,625,725 - -0.6
3,625,725 - -1.1
3,625,725 - +1.0
3,625,725 - +0.7
3,625,725 - +2.5
3,625,725 - +0.7
3,625,726 + +0.7
3,625,726 + -1.5
3,625,726 + +0.4
3,625,726 + +0.3
3,625,726 + -0.3
3,625,726 + +0.2
3,625,726 + -0.5
3,625,726 + +1.7
3,625,726 + -1.4
3,625,726 + +0.4
3,625,726 + +0.2
3,625,726 + -0.2
3,625,726 + +0.4
3,625,726 + -0.7
3,625,726 + +0.3
3,625,726 + -1.6
3,625,726 + -1.6
3,625,726 + -0.4
3,625,727 - -1.6
3,625,727 - -1.3
3,625,727 - +0.3
3,625,727 - -0.5
3,625,727 - +0.7
3,625,727 - -1.6
3,625,727 - -0.4
3,625,727 - -0.6
3,625,727 - +0.0
3,625,727 - -1.2
3,625,727 - +0.7
3,625,727 - +0.2
3,625,727 - +0.5
3,625,727 - +0.5
3,625,727 - -1.0
3,625,727 - +0.7
3,625,727 - -0.3
3,625,727 - -0.4
3,625,727 - +0.8
3,625,727 - -1.5
3,625,812 + -2.6
3,625,835 + -0.0
3,625,836 - -0.8
3,625,836 - +1.3

Or see this region's nucleotide sequence