Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00895

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00890 and AO353_00895 are separated by 200 nucleotidesAO353_00895 and AO353_00900 are separated by 67 nucleotidesAO353_00900 and AO353_00905 overlap by 4 nucleotides AO353_00890: AO353_00890 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 201,359 to 203,953 _00890 AO353_00895: AO353_00895 - 2-methylcitrate synthase, at 204,154 to 205,281 _00895 AO353_00900: AO353_00900 - 2-methylisocitrate lyase, at 205,349 to 206,242 _00900 AO353_00905: AO353_00905 - GntR family transcriptional regulator, at 206,239 to 206,961 _00905 Position (kb) 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 203.848 kb on - strandat 203.863 kb on - strandat 203.977 kb on + strandat 203.978 kb on - strandat 204.021 kb on + strandat 204.021 kb on + strandat 204.022 kb on - strandat 204.107 kb on + strandat 204.107 kb on + strandat 204.108 kb on - strandat 204.108 kb on - strandat 204.108 kb on - strandat 204.108 kb on - strandat 204.200 kb on + strandat 204.200 kb on + strandat 204.201 kb on - strandat 204.341 kb on + strand, within AO353_00895at 204.341 kb on + strand, within AO353_00895at 204.341 kb on + strand, within AO353_00895at 204.341 kb on + strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.342 kb on - strand, within AO353_00895at 204.491 kb on + strand, within AO353_00895at 204.491 kb on + strand, within AO353_00895at 204.491 kb on + strand, within AO353_00895at 204.492 kb on - strand, within AO353_00895at 204.492 kb on - strand, within AO353_00895at 204.731 kb on + strand, within AO353_00895at 204.875 kb on + strand, within AO353_00895at 204.875 kb on + strand, within AO353_00895at 204.876 kb on - strand, within AO353_00895at 205.076 kb on + strand, within AO353_00895at 205.076 kb on + strand, within AO353_00895at 205.076 kb on + strand, within AO353_00895at 205.077 kb on - strand, within AO353_00895at 205.077 kb on - strand, within AO353_00895at 205.112 kb on + strand, within AO353_00895at 205.112 kb on + strand, within AO353_00895at 205.112 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.172 kb on + strandat 205.182 kb on - strandat 205.208 kb on - strandat 205.265 kb on - strandat 205.265 kb on - strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.325 kb on - strandat 205.341 kb on - strandat 205.417 kb on - strandat 205.485 kb on + strand, within AO353_00900at 205.485 kb on + strand, within AO353_00900at 205.486 kb on - strand, within AO353_00900at 205.486 kb on - strand, within AO353_00900at 205.578 kb on + strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strandat 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strandat 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.670 kb on - strand, within AO353_00900at 205.670 kb on - strand, within AO353_00900at 205.852 kb on + strand, within AO353_00900at 206.024 kb on + strand, within AO353_00900at 206.024 kb on + strand, within AO353_00900at 206.109 kb on + strand, within AO353_00900at 206.109 kb on + strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strandat 206.110 kb on - strandat 206.113 kb on + strand, within AO353_00900at 206.113 kb on + strand, within AO353_00900at 206.113 kb on + strand, within AO353_00900

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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203,848 - +2.2
203,863 - +0.6
203,977 + +0.2
203,978 - -1.6
204,021 + -0.6
204,021 + -0.6
204,022 - +0.2
204,107 + -0.5
204,107 + +0.4
204,108 - +0.2
204,108 - -0.8
204,108 - -2.1
204,108 - +0.7
204,200 + +2.3
204,200 + +0.5
204,201 - +0.6
204,341 + AO353_00895 0.17 +1.2
204,341 + AO353_00895 0.17 +1.8
204,341 + AO353_00895 0.17 +1.9
204,341 + AO353_00895 0.17 +2.6
204,342 - AO353_00895 0.17 +1.4
204,342 - AO353_00895 0.17 +1.2
204,342 - AO353_00895 0.17 +0.8
204,342 - AO353_00895 0.17 +1.1
204,342 - AO353_00895 0.17 +0.6
204,342 - AO353_00895 0.17 +0.6
204,491 + AO353_00895 0.30 -0.9
204,491 + AO353_00895 0.30 -0.1
204,491 + AO353_00895 0.30 +1.3
204,492 - AO353_00895 0.30 +1.7
204,492 - AO353_00895 0.30 +0.6
204,731 + AO353_00895 0.51 +1.1
204,875 + AO353_00895 0.64 -0.8
204,875 + AO353_00895 0.64 +0.6
204,876 - AO353_00895 0.64 +1.5
205,076 + AO353_00895 0.82 -0.4
205,076 + AO353_00895 0.82 +1.8
205,076 + AO353_00895 0.82 +1.3
205,077 - AO353_00895 0.82 +1.2
205,077 - AO353_00895 0.82 +1.2
205,112 + AO353_00895 0.85 +1.5
205,112 + AO353_00895 0.85 +1.9
205,112 + AO353_00895 0.85 +2.2
205,124 + AO353_00895 0.86 +2.7
205,124 + AO353_00895 0.86 +1.1
205,124 + AO353_00895 0.86 +3.1
205,124 + AO353_00895 0.86 +0.4
205,124 + AO353_00895 0.86 +1.2
205,124 + AO353_00895 0.86 +1.9
205,125 - AO353_00895 0.86 +1.4
205,125 - AO353_00895 0.86 +1.8
205,125 - AO353_00895 0.86 +1.4
205,125 - AO353_00895 0.86 -0.0
205,125 - AO353_00895 0.86 +0.5
205,172 + +1.7
205,182 - +2.4
205,208 - +1.4
205,265 - +3.2
205,265 - -0.4
205,324 + +0.1
205,324 + +0.9
205,324 + +0.6
205,324 + +1.4
205,325 - +0.6
205,341 - +1.7
205,417 - +1.3
205,485 + AO353_00900 0.15 +0.2
205,485 + AO353_00900 0.15 -0.6
205,486 - AO353_00900 0.15 -0.1
205,486 - AO353_00900 0.15 -0.6
205,578 + AO353_00900 0.26 -1.4
205,579 - AO353_00900 0.26 +0.6
205,579 - AO353_00900 0.26 -1.3
205,579 - AO353_00900 0.26 -0.7
205,650 + AO353_00900 0.34 -0.1
205,650 + AO353_00900 0.34 -0.8
205,650 + AO353_00900 0.34 -0.6
205,650 + AO353_00900 0.34 +0.6
205,650 + AO353_00900 0.34 -1.3
205,650 + AO353_00900 0.34 -2.1
205,650 + AO353_00900 0.34 -0.9
205,650 + +1.2
205,651 - AO353_00900 0.34 +0.1
205,651 - AO353_00900 0.34 -0.9
205,651 - AO353_00900 0.34 +0.1
205,651 - AO353_00900 0.34 -1.9
205,651 - AO353_00900 0.34 -3.3
205,651 - AO353_00900 0.34 -1.4
205,651 - AO353_00900 0.34 -2.2
205,651 - AO353_00900 0.34 -0.5
205,651 - AO353_00900 0.34 -0.6
205,651 - AO353_00900 0.34 -1.0
205,651 - AO353_00900 0.34 -0.1
205,651 - +1.2
205,651 - AO353_00900 0.34 +0.5
205,651 - AO353_00900 0.34 +0.4
205,651 - AO353_00900 0.34 -0.5
205,670 - AO353_00900 0.36 -2.1
205,670 - AO353_00900 0.36 -0.9
205,852 + AO353_00900 0.56 -1.0
206,024 + AO353_00900 0.76 -0.4
206,024 + AO353_00900 0.76 -1.4
206,109 + AO353_00900 0.85 +0.9
206,109 + AO353_00900 0.85 +0.6
206,110 - AO353_00900 0.85 -1.1
206,110 - AO353_00900 0.85 -2.1
206,110 - AO353_00900 0.85 +0.5
206,110 - AO353_00900 0.85 +0.2
206,110 - AO353_00900 0.85 -1.7
206,110 - AO353_00900 0.85 +0.6
206,110 - AO353_00900 0.85 -0.6
206,110 - AO353_00900 0.85 +0.8
206,110 - AO353_00900 0.85 +0.0
206,110 - AO353_00900 0.85 +0.0
206,110 - +0.6
206,110 - -0.4
206,113 + AO353_00900 0.85 -0.8
206,113 + AO353_00900 0.85 -0.8
206,113 + AO353_00900 0.85 -1.7

Or see this region's nucleotide sequence