Experiment: 4C survival; 672 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00695 and AO353_00700 are separated by 490 nucleotides AO353_00700 and AO353_00705 are separated by 136 nucleotides AO353_00705 and AO353_00710 are separated by 416 nucleotides
AO353_00695: AO353_00695 - diguanylate cyclase, at 147,342 to 149,042
_00695
AO353_00700: AO353_00700 - Cro/Cl family transcriptional regulator, at 149,533 to 149,847
_00700
AO353_00705: AO353_00705 - drug:proton antiporter, at 149,984 to 150,352
_00705
AO353_00710: AO353_00710 - aromatic ring-opening dioxygenase LigA, at 150,769 to 153,126
_00710
Position (kb) 149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 148.588 kb on + strand, within AO353_00695 at 148.621 kb on + strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.723 kb on + strand, within AO353_00695 at 148.934 kb on - strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.967 kb on - strand at 148.967 kb on - strand at 148.967 kb on - strand at 148.967 kb on - strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 149.016 kb on + strand at 149.016 kb on + strand at 149.016 kb on + strand at 149.017 kb on - strand at 149.017 kb on - strand at 149.017 kb on - strand at 149.029 kb on + strand at 149.030 kb on - strand at 149.071 kb on + strand at 149.171 kb on + strand at 149.171 kb on + strand at 149.171 kb on + strand at 149.172 kb on - strand at 149.254 kb on + strand at 149.254 kb on + strand at 149.254 kb on + strand at 149.255 kb on - strand at 149.255 kb on - strand at 149.271 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.391 kb on - strand at 149.416 kb on + strand at 149.416 kb on + strand at 149.432 kb on + strand at 149.433 kb on - strand at 149.440 kb on - strand at 149.440 kb on - strand at 149.589 kb on + strand, within AO353_00700 at 149.589 kb on + strand, within AO353_00700 at 149.590 kb on - strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.761 kb on + strand, within AO353_00700 at 149.762 kb on - strand, within AO353_00700 at 149.762 kb on - strand, within AO353_00700 at 149.777 kb on + strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.877 kb on + strand at 149.877 kb on + strand at 149.877 kb on + strand at 149.888 kb on + strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.916 kb on + strand at 149.916 kb on + strand at 149.916 kb on + strand at 149.946 kb on - strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.011 kb on + strand at 150.011 kb on + strand at 150.012 kb on - strand at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.045 kb on - strand, within AO353_00705 at 150.045 kb on - strand, within AO353_00705 at 150.079 kb on - strand, within AO353_00705 at 150.079 kb on - strand, within AO353_00705 at 150.117 kb on + strand, within AO353_00705 at 150.117 kb on + strand, within AO353_00705 at 150.118 kb on - strand, within AO353_00705 at 150.118 kb on - strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.651 kb on - strand at 150.658 kb on - strand at 150.704 kb on + strand at 150.716 kb on + strand at 150.716 kb on + strand at 150.717 kb on - strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 672 hrs remove 148,588 + AO353_00695 0.73 -0.4 148,621 + AO353_00695 0.75 +0.3 148,622 - AO353_00695 0.75 -1.9 148,622 - AO353_00695 0.75 -2.4 148,622 - AO353_00695 0.75 -2.4 148,622 - AO353_00695 0.75 -0.5 148,622 - AO353_00695 0.75 +3.0 148,723 + AO353_00695 0.81 -1.6 148,934 - -0.9 148,966 + +0.2 148,966 + -0.8 148,966 + -1.5 148,966 + -0.0 148,966 + -0.7 148,966 + -1.9 148,966 + -1.2 148,966 + -0.2 148,966 + -1.3 148,966 + -1.4 148,967 - -2.6 148,967 - -0.0 148,967 - -1.9 148,967 - -3.1 148,970 + -2.5 148,970 + -1.4 148,970 + -0.2 148,970 + -2.9 148,970 + +0.5 148,970 + +0.4 148,971 - -0.0 148,971 - -0.9 148,971 - -1.0 148,971 - -1.9 148,971 - -2.2 148,971 - -1.2 149,016 + -2.1 149,016 + +1.2 149,016 + -2.2 149,017 - -1.2 149,017 - -1.2 149,017 - -1.6 149,029 + -1.0 149,030 - -2.6 149,071 + -1.4 149,171 + -1.3 149,171 + -2.2 149,171 + -1.4 149,172 - -0.6 149,254 + -2.2 149,254 + -2.2 149,254 + -1.2 149,255 - +4.3 149,255 - +5.4 149,271 + -1.9 149,390 + -2.1 149,390 + -0.6 149,390 + -0.2 149,390 + +0.2 149,390 + -0.7 149,390 + -2.4 149,391 - +6.5 149,416 + -2.5 149,416 + -1.6 149,432 + -3.1 149,433 - +2.4 149,440 - +3.1 149,440 - +3.2 149,589 + AO353_00700 0.18 -0.6 149,589 + AO353_00700 0.18 -0.1 149,590 - AO353_00700 0.18 +4.6 149,659 + AO353_00700 0.40 +1.0 149,659 + AO353_00700 0.40 +1.1 149,659 + AO353_00700 0.40 +0.3 149,659 + AO353_00700 0.40 +0.5 149,659 + AO353_00700 0.40 +2.5 149,659 + AO353_00700 0.40 -1.5 149,659 + AO353_00700 0.40 +0.9 149,659 + AO353_00700 0.40 +0.6 149,659 + AO353_00700 0.40 +1.3 149,659 + AO353_00700 0.40 +0.0 149,659 + AO353_00700 0.40 +0.8 149,659 + AO353_00700 0.40 +2.2 149,660 - AO353_00700 0.40 +3.2 149,660 - AO353_00700 0.40 +4.0 149,660 - AO353_00700 0.40 +3.3 149,660 - AO353_00700 0.40 +4.0 149,660 - AO353_00700 0.40 +5.4 149,660 - AO353_00700 0.40 +4.0 149,660 - AO353_00700 0.40 +4.5 149,660 - AO353_00700 0.40 +3.8 149,660 - AO353_00700 0.40 +3.7 149,660 - AO353_00700 0.40 +4.2 149,660 - AO353_00700 0.40 +3.5 149,660 - AO353_00700 0.40 +5.5 149,660 - AO353_00700 0.40 +4.1 149,660 - AO353_00700 0.40 +3.4 149,660 - AO353_00700 0.40 +3.9 149,660 - AO353_00700 0.40 +4.8 149,660 - AO353_00700 0.40 +5.0 149,660 - AO353_00700 0.40 +4.7 149,761 + AO353_00700 0.72 +2.2 149,762 - AO353_00700 0.73 +2.9 149,762 - AO353_00700 0.73 +3.5 149,777 + AO353_00700 0.77 +1.8 149,778 - AO353_00700 0.78 +2.6 149,778 - AO353_00700 0.78 +4.0 149,778 - AO353_00700 0.78 +2.9 149,877 + +0.2 149,877 + +1.4 149,877 + +1.6 149,888 + +1.2 149,889 - +2.3 149,889 - +2.0 149,889 - +3.5 149,889 - +3.0 149,889 - +4.5 149,916 + -0.2 149,916 + +0.3 149,916 + -1.3 149,946 - +0.4 149,999 + +0.8 149,999 + +1.7 149,999 + +0.1 149,999 + +1.3 149,999 + +0.4 149,999 + +0.4 150,000 - +0.0 150,000 - +0.2 150,000 - +1.9 150,000 - +2.4 150,011 + -1.4 150,011 + +1.2 150,012 - +0.0 150,044 + AO353_00705 0.16 +1.6 150,044 + AO353_00705 0.16 +1.4 150,044 + AO353_00705 0.16 -0.6 150,044 + AO353_00705 0.16 +1.2 150,044 + AO353_00705 0.16 -0.6 150,044 + AO353_00705 0.16 +0.9 150,044 + AO353_00705 0.16 +0.8 150,044 + AO353_00705 0.16 -1.0 150,045 - AO353_00705 0.17 +0.3 150,045 - AO353_00705 0.17 +0.9 150,079 - AO353_00705 0.26 +0.2 150,079 - AO353_00705 0.26 +1.8 150,117 + AO353_00705 0.36 +0.3 150,117 + AO353_00705 0.36 -2.6 150,118 - AO353_00705 0.36 -0.8 150,118 - AO353_00705 0.36 -0.5 150,227 + AO353_00705 0.66 -0.6 150,227 + AO353_00705 0.66 +0.3 150,227 + AO353_00705 0.66 +1.2 150,227 + AO353_00705 0.66 -0.6 150,227 + AO353_00705 0.66 +0.9 150,227 + AO353_00705 0.66 +1.2 150,228 - AO353_00705 0.66 +0.8 150,228 - AO353_00705 0.66 +1.1 150,228 - AO353_00705 0.66 -1.4 150,228 - AO353_00705 0.66 -0.5 150,228 - AO353_00705 0.66 +0.1 150,651 - -0.6 150,658 - -0.7 150,704 + +0.3 150,716 + -0.2 150,716 + +1.9 150,717 - -1.2 150,724 + +0.2 150,724 + -0.3 150,724 + +1.0 150,724 + -0.3 150,724 + +1.2 150,724 + -0.2 150,724 + +0.4 150,724 + -0.4 150,724 + -0.4 150,724 + +2.6 150,724 + +0.6 150,724 + +0.5 150,724 + +0.5 150,724 + +1.4 150,724 + +0.8 150,724 + -0.3 150,725 - -0.2 150,725 - -0.5 150,725 - +0.9 150,725 - -0.2 150,725 - -0.4 150,725 - -1.0 150,725 - -1.3 150,725 - -2.5 150,725 - +0.8 150,725 - +1.4 150,725 - +0.2 150,725 - +0.8 150,725 - -0.1 150,725 - +1.4 150,725 - -0.6 150,725 - -1.3 150,725 - -0.6 150,725 - +0.0 150,725 - +0.7 150,725 - -0.3 150,725 - -0.2 150,725 - +0.2 150,725 - +1.2 150,725 - +0.3 150,725 - -0.2 150,725 - -0.4
Or see this region's nucleotide sequence