Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3579 and Rru_A3580 are separated by 13 nucleotides Rru_A3580 and Rru_A3581 are separated by 110 nucleotides Rru_A3581 and Rru_A3582 are separated by 99 nucleotides Rru_A3582 and Rru_A3583 are separated by 59 nucleotides
Rru_A3579: Rru_A3579 - Peptidase M48, Ste24p (NCBI), at 4,122,796 to 4,123,677
_A3579
Rru_A3580: Rru_A3580 - Protein of unknown function DUF6, transmembrane (NCBI), at 4,123,691 to 4,124,575
_A3580
Rru_A3581: Rru_A3581 - Transcriptional coactivator/pterin dehydratase (NCBI), at 4,124,686 to 4,124,976
_A3581
Rru_A3582: Rru_A3582 - Protein of unknown function DUF1025 (NCBI), at 4,125,076 to 4,125,483
_A3582
Rru_A3583: Rru_A3583 - ATP-dependent protease-like (NCBI), at 4,125,543 to 4,127,525
_A3583
Position (kb) 4123
4124
4125 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4122.755 kb on + strand at 4122.755 kb on + strand at 4122.756 kb on - strand at 4122.756 kb on - strand at 4123.004 kb on - strand, within Rru_A3579 at 4123.004 kb on - strand, within Rru_A3579 at 4123.004 kb on - strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.839 kb on + strand, within Rru_A3580 at 4123.839 kb on + strand, within Rru_A3580 at 4123.839 kb on + strand, within Rru_A3580 at 4123.840 kb on - strand, within Rru_A3580 at 4123.840 kb on - strand, within Rru_A3580 at 4124.079 kb on + strand, within Rru_A3580 at 4124.079 kb on + strand, within Rru_A3580 at 4124.080 kb on - strand, within Rru_A3580 at 4124.277 kb on + strand, within Rru_A3580 at 4124.278 kb on - strand, within Rru_A3580 at 4124.278 kb on - strand, within Rru_A3580 at 4124.328 kb on + strand, within Rru_A3580 at 4124.329 kb on - strand, within Rru_A3580 at 4124.329 kb on - strand, within Rru_A3580 at 4124.329 kb on - strand, within Rru_A3580 at 4124.642 kb on + strand at 4124.769 kb on + strand, within Rru_A3581 at 4124.769 kb on + strand, within Rru_A3581 at 4124.770 kb on - strand, within Rru_A3581 at 4124.783 kb on + strand, within Rru_A3581 at 4124.783 kb on + strand, within Rru_A3581 at 4125.058 kb on + strand at 4125.058 kb on + strand at 4125.058 kb on + strand at 4125.059 kb on - strand at 4125.085 kb on - strand at 4125.362 kb on - strand, within Rru_A3582 at 4125.481 kb on + strand at 4125.481 kb on + strand at 4125.482 kb on - strand at 4125.482 kb on - strand at 4125.500 kb on - strand at 4125.500 kb on - strand at 4125.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 4,122,755 + +0.0 4,122,755 + -1.0 4,122,756 - -1.9 4,122,756 - -1.2 4,123,004 - Rru_A3579 0.24 +0.0 4,123,004 - Rru_A3579 0.24 -2.2 4,123,004 - Rru_A3579 0.24 -1.8 4,123,057 + Rru_A3579 0.30 -2.0 4,123,057 + Rru_A3579 0.30 +0.0 4,123,057 + Rru_A3579 0.30 -1.3 4,123,057 + Rru_A3579 0.30 +0.0 4,123,058 - Rru_A3579 0.30 -2.0 4,123,058 - Rru_A3579 0.30 +0.0 4,123,058 - Rru_A3579 0.30 +0.0 4,123,058 - Rru_A3579 0.30 -3.8 4,123,058 - Rru_A3579 0.30 -1.6 4,123,058 - Rru_A3579 0.30 +0.0 4,123,839 + Rru_A3580 0.17 +0.0 4,123,839 + Rru_A3580 0.17 +0.0 4,123,839 + Rru_A3580 0.17 -2.6 4,123,840 - Rru_A3580 0.17 +1.0 4,123,840 - Rru_A3580 0.17 -3.1 4,124,079 + Rru_A3580 0.44 -3.2 4,124,079 + Rru_A3580 0.44 -3.0 4,124,080 - Rru_A3580 0.44 -1.4 4,124,277 + Rru_A3580 0.66 +0.0 4,124,278 - Rru_A3580 0.66 -2.3 4,124,278 - Rru_A3580 0.66 -1.2 4,124,328 + Rru_A3580 0.72 -1.0 4,124,329 - Rru_A3580 0.72 -1.7 4,124,329 - Rru_A3580 0.72 +0.0 4,124,329 - Rru_A3580 0.72 -1.0 4,124,642 + -1.7 4,124,769 + Rru_A3581 0.29 -1.8 4,124,769 + Rru_A3581 0.29 +0.0 4,124,770 - Rru_A3581 0.29 +0.0 4,124,783 + Rru_A3581 0.33 -0.7 4,124,783 + Rru_A3581 0.33 -2.1 4,125,058 + -3.0 4,125,058 + -1.7 4,125,058 + +0.0 4,125,059 - -1.5 4,125,085 - +0.0 4,125,362 - Rru_A3582 0.70 +0.0 4,125,481 + -2.0 4,125,481 + -1.7 4,125,482 - -2.2 4,125,482 - +0.0 4,125,500 - -1.6 4,125,500 - -1.5 4,125,521 - -2.7
Or see this region's nucleotide sequence