Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3504

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3502 and Rru_A3503 are separated by 57 nucleotidesRru_A3503 and Rru_A3504 are separated by 8 nucleotidesRru_A3504 and Rru_A3505 are separated by 43 nucleotidesRru_A3505 and Rru_A3506 are separated by 75 nucleotides Rru_A3502: Rru_A3502 - hypothetical protein (NCBI), at 4,030,033 to 4,030,488 _A3502 Rru_A3503: Rru_A3503 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 4,030,546 to 4,031,010 _A3503 Rru_A3504: Rru_A3504 - putative phenylacetate-CoA ligase (NCBI), at 4,031,019 to 4,032,260 _A3504 Rru_A3505: Rru_A3505 - ABC transporter component (NCBI), at 4,032,304 to 4,033,149 _A3505 Rru_A3506: Rru_A3506 - putative branched-chain amino acid transport system substrate-binding protein (NCBI), at 4,033,225 to 4,034,451 _A3506 Position (kb) 4031 4032 4033Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4030.228 kb on + strand, within Rru_A3502at 4030.228 kb on + strand, within Rru_A3502at 4030.705 kb on + strand, within Rru_A3503at 4030.706 kb on - strand, within Rru_A3503at 4030.706 kb on - strand, within Rru_A3503at 4030.715 kb on - strand, within Rru_A3503at 4030.715 kb on - strand, within Rru_A3503at 4030.756 kb on + strand, within Rru_A3503at 4030.757 kb on - strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.867 kb on - strand, within Rru_A3503at 4030.891 kb on + strand, within Rru_A3503at 4031.026 kb on + strandat 4031.493 kb on + strand, within Rru_A3504at 4031.493 kb on + strand, within Rru_A3504at 4031.494 kb on - strand, within Rru_A3504at 4031.494 kb on - strand, within Rru_A3504at 4031.494 kb on - strand, within Rru_A3504at 4031.590 kb on + strand, within Rru_A3504at 4031.590 kb on + strand, within Rru_A3504at 4031.590 kb on + strand, within Rru_A3504at 4031.591 kb on - strand, within Rru_A3504at 4031.591 kb on - strand, within Rru_A3504at 4031.591 kb on - strand, within Rru_A3504at 4031.638 kb on + strand, within Rru_A3504at 4031.639 kb on - strand, within Rru_A3504at 4031.639 kb on - strand, within Rru_A3504at 4031.692 kb on + strand, within Rru_A3504at 4031.692 kb on + strand, within Rru_A3504at 4031.692 kb on + strand, within Rru_A3504at 4031.693 kb on - strand, within Rru_A3504at 4031.693 kb on - strand, within Rru_A3504at 4031.740 kb on + strand, within Rru_A3504at 4031.740 kb on + strand, within Rru_A3504at 4031.740 kb on + strand, within Rru_A3504at 4031.741 kb on - strand, within Rru_A3504at 4031.869 kb on + strand, within Rru_A3504at 4031.882 kb on + strand, within Rru_A3504at 4031.883 kb on - strand, within Rru_A3504at 4031.883 kb on - strand, within Rru_A3504at 4031.941 kb on + strand, within Rru_A3504at 4031.968 kb on + strand, within Rru_A3504at 4031.969 kb on - strand, within Rru_A3504at 4031.969 kb on - strand, within Rru_A3504at 4031.969 kb on - strand, within Rru_A3504at 4031.969 kb on - strand, within Rru_A3504at 4032.148 kb on + strandat 4032.149 kb on - strandat 4032.149 kb on - strandat 4032.305 kb on + strandat 4032.305 kb on + strandat 4032.306 kb on - strandat 4032.306 kb on - strandat 4032.306 kb on - strandat 4032.306 kb on - strandat 4032.307 kb on + strandat 4032.307 kb on + strandat 4032.308 kb on - strandat 4032.329 kb on + strandat 4032.330 kb on - strandat 4032.380 kb on + strandat 4032.380 kb on + strandat 4032.381 kb on - strandat 4032.381 kb on - strandat 4032.456 kb on + strand, within Rru_A3505at 4032.456 kb on + strand, within Rru_A3505at 4032.456 kb on + strand, within Rru_A3505at 4032.456 kb on + strand, within Rru_A3505at 4032.456 kb on + strand, within Rru_A3505at 4032.456 kb on + strand, within Rru_A3505at 4032.457 kb on - strand, within Rru_A3505at 4032.457 kb on - strand, within Rru_A3505at 4032.457 kb on - strand, within Rru_A3505at 4032.458 kb on + strand, within Rru_A3505at 4032.458 kb on + strand, within Rru_A3505at 4032.458 kb on + strand, within Rru_A3505at 4032.458 kb on + strand, within Rru_A3505at 4032.459 kb on - strand, within Rru_A3505at 4032.464 kb on + strand, within Rru_A3505at 4032.607 kb on + strand, within Rru_A3505at 4032.607 kb on + strand, within Rru_A3505at 4032.607 kb on + strand, within Rru_A3505at 4032.608 kb on - strand, within Rru_A3505at 4032.713 kb on + strand, within Rru_A3505at 4032.714 kb on - strand, within Rru_A3505at 4032.714 kb on - strand, within Rru_A3505at 4032.714 kb on - strand, within Rru_A3505at 4032.714 kb on - strand, within Rru_A3505at 4032.714 kb on - strand, within Rru_A3505at 4032.714 kb on - strand, within Rru_A3505at 4032.805 kb on - strand, within Rru_A3505at 4032.805 kb on - strand, within Rru_A3505at 4033.062 kb on - strand, within Rru_A3505at 4033.062 kb on - strand, within Rru_A3505at 4033.062 kb on - strand, within Rru_A3505at 4033.078 kb on - strandat 4033.191 kb on + strandat 4033.192 kb on - strandat 4033.192 kb on - strandat 4033.192 kb on - strandat 4033.226 kb on + strandat 4033.226 kb on + strandat 4033.227 kb on - strandat 4033.227 kb on - strandat 4033.227 kb on - strandat 4033.229 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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4,030,228 + Rru_A3502 0.43 +0.0
4,030,228 + Rru_A3502 0.43 +0.0
4,030,705 + Rru_A3503 0.34 -1.5
4,030,706 - Rru_A3503 0.34 +0.0
4,030,706 - Rru_A3503 0.34 +0.0
4,030,715 - Rru_A3503 0.36 +0.0
4,030,715 - Rru_A3503 0.36 -1.3
4,030,756 + Rru_A3503 0.45 +0.0
4,030,757 - Rru_A3503 0.45 +0.0
4,030,849 + Rru_A3503 0.65 -1.0
4,030,849 + Rru_A3503 0.65 +0.0
4,030,849 + Rru_A3503 0.65 -1.0
4,030,849 + Rru_A3503 0.65 +1.0
4,030,849 + Rru_A3503 0.65 +0.0
4,030,849 + Rru_A3503 0.65 -3.0
4,030,849 + Rru_A3503 0.65 -3.1
4,030,849 + Rru_A3503 0.65 -3.0
4,030,849 + Rru_A3503 0.65 -1.5
4,030,849 + Rru_A3503 0.65 -0.5
4,030,849 + Rru_A3503 0.65 -2.8
4,030,850 - Rru_A3503 0.65 -1.5
4,030,850 - Rru_A3503 0.65 -1.2
4,030,850 - Rru_A3503 0.65 +1.0
4,030,850 - Rru_A3503 0.65 +0.4
4,030,850 - Rru_A3503 0.65 +0.0
4,030,850 - Rru_A3503 0.65 -1.5
4,030,850 - Rru_A3503 0.65 -4.1
4,030,850 - Rru_A3503 0.65 -1.8
4,030,867 - Rru_A3503 0.69 -1.4
4,030,891 + Rru_A3503 0.74 -1.2
4,031,026 + -1.2
4,031,493 + Rru_A3504 0.38 -2.2
4,031,493 + Rru_A3504 0.38 -3.1
4,031,494 - Rru_A3504 0.38 +0.0
4,031,494 - Rru_A3504 0.38 -2.1
4,031,494 - Rru_A3504 0.38 +2.0
4,031,590 + Rru_A3504 0.46 -2.6
4,031,590 + Rru_A3504 0.46 -2.1
4,031,590 + Rru_A3504 0.46 +0.0
4,031,591 - Rru_A3504 0.46 -2.5
4,031,591 - Rru_A3504 0.46 +0.0
4,031,591 - Rru_A3504 0.46 -1.0
4,031,638 + Rru_A3504 0.50 -1.5
4,031,639 - Rru_A3504 0.50 -1.0
4,031,639 - Rru_A3504 0.50 -0.7
4,031,692 + Rru_A3504 0.54 -2.4
4,031,692 + Rru_A3504 0.54 -0.5
4,031,692 + Rru_A3504 0.54 -3.2
4,031,693 - Rru_A3504 0.54 -2.8
4,031,693 - Rru_A3504 0.54 +0.0
4,031,740 + Rru_A3504 0.58 +0.0
4,031,740 + Rru_A3504 0.58 -1.0
4,031,740 + Rru_A3504 0.58 +0.0
4,031,741 - Rru_A3504 0.58 +0.0
4,031,869 + Rru_A3504 0.68 -1.1
4,031,882 + Rru_A3504 0.69 +0.0
4,031,883 - Rru_A3504 0.70 -1.6
4,031,883 - Rru_A3504 0.70 -1.4
4,031,941 + Rru_A3504 0.74 +0.0
4,031,968 + Rru_A3504 0.76 +0.0
4,031,969 - Rru_A3504 0.76 +0.0
4,031,969 - Rru_A3504 0.76 -2.2
4,031,969 - Rru_A3504 0.76 -2.3
4,031,969 - Rru_A3504 0.76 +0.6
4,032,148 + +0.0
4,032,149 - -1.5
4,032,149 - +0.6
4,032,305 + -2.7
4,032,305 + -1.0
4,032,306 - +0.0
4,032,306 - -1.5
4,032,306 - +0.0
4,032,306 - +0.0
4,032,307 + +0.0
4,032,307 + +0.0
4,032,308 - +0.0
4,032,329 + +0.0
4,032,330 - +0.0
4,032,380 + +0.0
4,032,380 + -0.7
4,032,381 - -2.3
4,032,381 - -1.4
4,032,456 + Rru_A3505 0.18 +0.0
4,032,456 + Rru_A3505 0.18 +0.0
4,032,456 + Rru_A3505 0.18 -1.5
4,032,456 + Rru_A3505 0.18 +0.0
4,032,456 + Rru_A3505 0.18 +0.0
4,032,456 + Rru_A3505 0.18 -2.0
4,032,457 - Rru_A3505 0.18 +0.0
4,032,457 - Rru_A3505 0.18 -0.9
4,032,457 - Rru_A3505 0.18 -1.4
4,032,458 + Rru_A3505 0.18 +0.0
4,032,458 + Rru_A3505 0.18 -3.3
4,032,458 + Rru_A3505 0.18 -1.0
4,032,458 + Rru_A3505 0.18 -2.5
4,032,459 - Rru_A3505 0.18 +0.3
4,032,464 + Rru_A3505 0.19 -2.3
4,032,607 + Rru_A3505 0.36 -0.5
4,032,607 + Rru_A3505 0.36 -2.0
4,032,607 + Rru_A3505 0.36 -0.7
4,032,608 - Rru_A3505 0.36 -3.4
4,032,713 + Rru_A3505 0.48 +0.0
4,032,714 - Rru_A3505 0.48 -3.0
4,032,714 - Rru_A3505 0.48 -0.5
4,032,714 - Rru_A3505 0.48 -1.0
4,032,714 - Rru_A3505 0.48 -2.3
4,032,714 - Rru_A3505 0.48 -1.0
4,032,714 - Rru_A3505 0.48 -1.7
4,032,805 - Rru_A3505 0.59 -2.8
4,032,805 - Rru_A3505 0.59 -0.3
4,033,062 - Rru_A3505 0.90 -2.7
4,033,062 - Rru_A3505 0.90 -2.1
4,033,062 - Rru_A3505 0.90 -3.0
4,033,078 - -2.4
4,033,191 + -1.6
4,033,192 - -1.0
4,033,192 - +0.0
4,033,192 - +0.0
4,033,226 + -0.9
4,033,226 + -1.9
4,033,227 - -1.4
4,033,227 - -1.6
4,033,227 - +0.0
4,033,229 + -1.3

Or see this region's nucleotide sequence