Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2941

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2940 and Rru_A2941 are separated by 176 nucleotidesRru_A2941 and Rru_A2942 are separated by 140 nucleotides Rru_A2940: Rru_A2940 - Glycine cleavage T protein (aminomethyl transferase) (NCBI), at 3,388,714 to 3,389,652 _A2940 Rru_A2941: Rru_A2941 - putative DNA-binding protein (NCBI), at 3,389,829 to 3,390,122 _A2941 Rru_A2942: Rru_A2942 - ABC transporter, transmembrane region (NCBI), at 3,390,263 to 3,392,080 _A2942 Position (kb) 3389 3390 3391Strain fitness (log2 ratio) -2 -1 0 1at 3389.733 kb on + strandat 3389.799 kb on - strandat 3389.845 kb on + strandat 3389.845 kb on + strandat 3389.845 kb on + strandat 3389.845 kb on + strandat 3389.871 kb on + strand, within Rru_A2941at 3389.871 kb on + strand, within Rru_A2941at 3389.871 kb on + strand, within Rru_A2941at 3389.871 kb on + strand, within Rru_A2941at 3389.871 kb on + strand, within Rru_A2941at 3389.872 kb on - strand, within Rru_A2941at 3390.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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3,389,733 + -1.5
3,389,799 - +0.0
3,389,845 + -2.5
3,389,845 + -1.3
3,389,845 + -1.0
3,389,845 + -1.0
3,389,871 + Rru_A2941 0.14 +0.0
3,389,871 + Rru_A2941 0.14 +0.0
3,389,871 + Rru_A2941 0.14 +0.0
3,389,871 + Rru_A2941 0.14 -1.0
3,389,871 + Rru_A2941 0.14 -1.5
3,389,872 - Rru_A2941 0.15 +0.0
3,390,201 - -1.5

Or see this region's nucleotide sequence