Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2811 and Rru_A2812 overlap by 17 nucleotides Rru_A2812 and Rru_A2813 are separated by 44 nucleotides Rru_A2813 and Rru_A2814 are separated by 108 nucleotides Rru_A2814 and Rru_A2815 are separated by 4 nucleotides Rru_A2815 and Rru_A2816 are separated by 136 nucleotides
Rru_A2811: Rru_A2811 - hypothetical protein (NCBI), at 3,244,402 to 3,245,727
_A2811
Rru_A2812: Rru_A2812 - molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI), at 3,245,711 to 3,246,382
_A2812
Rru_A2813: Rru_A2813 - Molybdopterin cofactor biosynthesis MoaC region (NCBI), at 3,246,427 to 3,246,927
_A2813
Rru_A2814: Rru_A2814 - Molybdopterin converting factor, subunit 1 (NCBI), at 3,247,036 to 3,247,287
_A2814
Rru_A2815: Rru_A2815 - Molybdopterin biosynthesis MoaE (NCBI), at 3,247,292 to 3,247,780
_A2815
Rru_A2816: Rru_A2816 - Transcriptional Regulator, TetR family (NCBI), at 3,247,917 to 3,248,495
_A2816
Position (kb) 3246
3247 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3245.692 kb on + strand at 3245.692 kb on + strand at 3245.692 kb on + strand at 3245.693 kb on - strand at 3245.693 kb on - strand at 3245.693 kb on - strand at 3246.304 kb on + strand, within Rru_A2812 at 3246.304 kb on + strand, within Rru_A2812 at 3246.305 kb on - strand, within Rru_A2812 at 3246.829 kb on + strand, within Rru_A2813 at 3246.829 kb on + strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.852 kb on + strand, within Rru_A2813 at 3247.048 kb on + strand at 3247.048 kb on + strand at 3247.049 kb on - strand at 3247.049 kb on - strand at 3247.049 kb on - strand at 3247.094 kb on + strand, within Rru_A2814 at 3247.094 kb on + strand, within Rru_A2814 at 3247.095 kb on - strand, within Rru_A2814 at 3247.095 kb on - strand, within Rru_A2814 at 3247.460 kb on + strand, within Rru_A2815
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 3,245,692 + -1.2 3,245,692 + -2.2 3,245,692 + +0.1 3,245,693 - -2.9 3,245,693 - -2.1 3,245,693 - -3.4 3,246,304 + Rru_A2812 0.88 -0.9 3,246,304 + Rru_A2812 0.88 -1.4 3,246,305 - Rru_A2812 0.88 -1.9 3,246,829 + Rru_A2813 0.80 +0.1 3,246,829 + Rru_A2813 0.80 +0.1 3,246,830 - Rru_A2813 0.80 +0.1 3,246,830 - Rru_A2813 0.80 +0.1 3,246,830 - Rru_A2813 0.80 +0.1 3,246,830 - Rru_A2813 0.80 -0.6 3,246,830 - Rru_A2813 0.80 -1.3 3,246,852 + Rru_A2813 0.85 +0.1 3,247,048 + -1.2 3,247,048 + +0.1 3,247,049 - -3.7 3,247,049 - -0.2 3,247,049 - +0.1 3,247,094 + Rru_A2814 0.23 -1.5 3,247,094 + Rru_A2814 0.23 +0.1 3,247,095 - Rru_A2814 0.23 -3.6 3,247,095 - Rru_A2814 0.23 +0.1 3,247,460 + Rru_A2815 0.34 -1.3
Or see this region's nucleotide sequence