Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2466 and Rru_A2467 are separated by 132 nucleotides Rru_A2467 and Rru_A2468 are separated by 255 nucleotides Rru_A2468 and Rru_A2469 are separated by 13 nucleotides Rru_A2469 and Rru_A2470 are separated by 81 nucleotides
Rru_A2466: Rru_A2466 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 2,866,351 to 2,866,791
_A2466
Rru_A2467: Rru_A2467 - Ribosomal protein L36 (NCBI), at 2,866,924 to 2,867,100
_A2467
Rru_A2468: Rru_A2468 - FeoA (NCBI), at 2,867,356 to 2,867,643
_A2468
Rru_A2469: Rru_A2469 - FeoA (NCBI), at 2,867,657 to 2,867,902
_A2469
Rru_A2470: Rru_A2470 - Ferrous iron transport protein B (NCBI), at 2,867,984 to 2,870,344
_A2470
Position (kb)
2867
2868 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2866.680 kb on + strand, within Rru_A2466 at 2866.790 kb on - strand at 2866.880 kb on + strand at 2866.880 kb on + strand at 2866.882 kb on + strand at 2866.887 kb on + strand at 2866.887 kb on + strand at 2866.887 kb on + strand at 2866.887 kb on + strand at 2866.887 kb on + strand at 2866.888 kb on - strand at 2866.888 kb on - strand at 2866.888 kb on - strand at 2866.888 kb on - strand at 2867.267 kb on + strand at 2867.267 kb on + strand at 2867.267 kb on + strand at 2867.323 kb on + strand at 2867.323 kb on + strand at 2867.323 kb on + strand at 2867.323 kb on + strand at 2867.324 kb on - strand at 2867.324 kb on - strand at 2867.324 kb on - strand at 2867.324 kb on - strand at 2867.630 kb on + strand at 2867.630 kb on + strand at 2867.631 kb on - strand at 2867.631 kb on - strand at 2867.739 kb on + strand, within Rru_A2469 at 2867.740 kb on - strand, within Rru_A2469 at 2867.983 kb on + strand at 2867.983 kb on + strand at 2867.983 kb on + strand at 2867.983 kb on + strand at 2867.984 kb on - strand at 2867.984 kb on - strand at 2867.984 kb on - strand at 2868.165 kb on - strand at 2868.218 kb on + strand at 2868.218 kb on + strand at 2868.218 kb on + strand at 2868.218 kb on + strand at 2868.219 kb on - strand at 2868.219 kb on - strand at 2868.250 kb on + strand, within Rru_A2470 at 2868.251 kb on - strand, within Rru_A2470 at 2868.288 kb on - strand, within Rru_A2470 at 2868.866 kb on + strand, within Rru_A2470 at 2868.866 kb on + strand, within Rru_A2470 at 2868.866 kb on + strand, within Rru_A2470 at 2868.866 kb on + strand, within Rru_A2470 at 2868.866 kb on + strand, within Rru_A2470 at 2868.867 kb on - strand, within Rru_A2470 at 2868.867 kb on - strand, within Rru_A2470 at 2868.867 kb on - strand, within Rru_A2470
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 2,866,680 + Rru_A2466 0.75 +0.2 2,866,790 - -2.6 2,866,880 + -1.4 2,866,880 + -0.5 2,866,882 + -0.4 2,866,887 + -1.5 2,866,887 + +0.2 2,866,887 + -3.0 2,866,887 + +0.2 2,866,887 + +0.2 2,866,888 - -0.8 2,866,888 - +0.2 2,866,888 - -0.2 2,866,888 - -0.5 2,867,267 + -1.7 2,867,267 + -1.7 2,867,267 + -0.8 2,867,323 + -2.6 2,867,323 + -1.4 2,867,323 + +0.2 2,867,323 + -2.3 2,867,324 - +0.2 2,867,324 - -0.8 2,867,324 - +0.2 2,867,324 - -1.6 2,867,630 + -1.4 2,867,630 + -0.5 2,867,631 - -0.4 2,867,631 - +0.2 2,867,739 + Rru_A2469 0.33 -1.2 2,867,740 - Rru_A2469 0.34 -0.0 2,867,983 + -0.8 2,867,983 + -1.9 2,867,983 + -0.8 2,867,983 + +0.2 2,867,984 - -1.4 2,867,984 - -0.8 2,867,984 - +0.2 2,868,165 - +0.2 2,868,218 + -1.3 2,868,218 + +0.2 2,868,218 + -0.6 2,868,218 + -0.8 2,868,219 - +0.2 2,868,219 - +0.2 2,868,250 + Rru_A2470 0.11 -1.6 2,868,251 - Rru_A2470 0.11 +0.2 2,868,288 - Rru_A2470 0.13 -2.4 2,868,866 + Rru_A2470 0.37 -2.4 2,868,866 + Rru_A2470 0.37 +0.2 2,868,866 + Rru_A2470 0.37 -1.9 2,868,866 + Rru_A2470 0.37 -1.4 2,868,866 + Rru_A2470 0.37 +0.2 2,868,867 - Rru_A2470 0.37 -0.7 2,868,867 - Rru_A2470 0.37 -3.3 2,868,867 - Rru_A2470 0.37 -0.9
Or see this region's nucleotide sequence