Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2367

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2366 and Rru_A2367 are separated by 179 nucleotidesRru_A2367 and Rru_A2368 overlap by 4 nucleotidesRru_A2368 and Rru_A2369 overlap by 55 nucleotides Rru_A2366: Rru_A2366 - chemotaxis sensory transducer (NCBI), at 2,757,614 to 2,759,296 _A2366 Rru_A2367: Rru_A2367 - Response regulator receiver domain protein (CheY) (NCBI), at 2,759,476 to 2,759,877 _A2367 Rru_A2368: Rru_A2368 - transcriptional regulator with PAS/PAC domain (NCBI), at 2,759,874 to 2,760,743 _A2368 Rru_A2369: Rru_A2369 - hypothetical protein (NCBI), at 2,760,689 to 2,761,843 _A2369 Position (kb) 2759 2760Strain fitness (log2 ratio) -2 -1 0 1at 2759.205 kb on + strandat 2759.205 kb on + strandat 2759.332 kb on - strandat 2759.484 kb on + strandat 2759.719 kb on + strand, within Rru_A2367at 2759.720 kb on - strand, within Rru_A2367at 2759.720 kb on - strand, within Rru_A2367at 2759.982 kb on + strand, within Rru_A2368at 2759.982 kb on + strand, within Rru_A2368at 2759.982 kb on + strand, within Rru_A2368at 2759.983 kb on - strand, within Rru_A2368at 2760.333 kb on + strand, within Rru_A2368at 2760.411 kb on + strand, within Rru_A2368at 2760.411 kb on + strand, within Rru_A2368at 2760.411 kb on + strand, within Rru_A2368at 2760.412 kb on - strand, within Rru_A2368at 2760.741 kb on + strandat 2760.741 kb on + strandat 2760.742 kb on - strandat 2760.742 kb on - strandat 2760.742 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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2,759,205 + +0.2
2,759,205 + +0.2
2,759,332 - +0.2
2,759,484 + -2.0
2,759,719 + Rru_A2367 0.60 +0.2
2,759,720 - Rru_A2367 0.61 +0.2
2,759,720 - Rru_A2367 0.61 +0.2
2,759,982 + Rru_A2368 0.12 +0.2
2,759,982 + Rru_A2368 0.12 -2.0
2,759,982 + Rru_A2368 0.12 -1.8
2,759,983 - Rru_A2368 0.13 -0.4
2,760,333 + Rru_A2368 0.53 -0.4
2,760,411 + Rru_A2368 0.62 +0.2
2,760,411 + Rru_A2368 0.62 -1.3
2,760,411 + Rru_A2368 0.62 -1.8
2,760,412 - Rru_A2368 0.62 -2.5
2,760,741 + -0.2
2,760,741 + +0.4
2,760,742 - +0.2
2,760,742 - +0.2
2,760,742 - +0.2

Or see this region's nucleotide sequence