Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1857

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1856 and Rru_A1857 are separated by 155 nucleotidesRru_A1857 and Rru_A1858 are separated by 112 nucleotidesRru_A1858 and Rru_A1859 are separated by 144 nucleotides Rru_A1856: Rru_A1856 - (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA (NCBI), at 2,153,978 to 2,156,125 _A1856 Rru_A1857: Rru_A1857 - RNA polymerase, omega subunit (NCBI), at 2,156,281 to 2,156,697 _A1857 Rru_A1858: Rru_A1858 - 7, 8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK (NCBI), at 2,156,810 to 2,157,295 _A1858 Rru_A1859: Rru_A1859 - Protein of unknown function DUF88 (NCBI), at 2,157,440 to 2,158,084 _A1859 Position (kb) 2156 2157Strain fitness (log2 ratio) -1 0 1 2 3 4at 2156.282 kb on + strandat 2156.811 kb on + strandat 2157.347 kb on - strandat 2157.350 kb on + strandat 2157.377 kb on - strandat 2157.661 kb on + strand, within Rru_A1859

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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2,156,282 + +4.3
2,156,811 + -1.0
2,157,347 - -1.1
2,157,350 + +0.0
2,157,377 - -1.5
2,157,661 + Rru_A1859 0.34 -1.7

Or see this region's nucleotide sequence