Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1676

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1675 and Rru_A1676 are separated by 223 nucleotidesRru_A1676 and Rru_A1677 are separated by 2 nucleotides Rru_A1675: Rru_A1675 - Cytochrome c assembly protein (NCBI), at 1,964,444 to 1,965,322 _A1675 Rru_A1676: Rru_A1676 - Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI), at 1,965,546 to 1,966,634 _A1676 Rru_A1677: Rru_A1677 - Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI), at 1,966,637 to 1,967,737 _A1677 Position (kb) 1965 1966 1967Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1964.613 kb on + strand, within Rru_A1675at 1964.614 kb on - strand, within Rru_A1675at 1964.614 kb on - strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.807 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.925 kb on - strand, within Rru_A1675at 1965.065 kb on + strand, within Rru_A1675at 1965.065 kb on + strand, within Rru_A1675at 1965.066 kb on - strand, within Rru_A1675at 1965.066 kb on - strand, within Rru_A1675at 1965.066 kb on - strand, within Rru_A1675at 1965.066 kb on - strand, within Rru_A1675at 1965.067 kb on + strand, within Rru_A1675at 1965.067 kb on + strand, within Rru_A1675at 1965.263 kb on + strandat 1965.264 kb on - strandat 1965.264 kb on - strandat 1965.264 kb on - strandat 1965.264 kb on - strandat 1965.388 kb on + strandat 1965.391 kb on + strandat 1965.422 kb on + strandat 1965.423 kb on - strandat 1965.423 kb on - strandat 1965.645 kb on + strandat 1965.645 kb on + strandat 1965.646 kb on - strandat 1966.092 kb on + strand, within Rru_A1676at 1966.092 kb on + strand, within Rru_A1676at 1966.092 kb on + strand, within Rru_A1676at 1966.092 kb on + strand, within Rru_A1676at 1966.092 kb on + strand, within Rru_A1676at 1966.092 kb on + strand, within Rru_A1676at 1966.092 kb on + strand, within Rru_A1676at 1966.092 kb on + strand, within Rru_A1676at 1966.092 kb on + strand, within Rru_A1676at 1966.092 kb on + strand, within Rru_A1676at 1966.093 kb on - strand, within Rru_A1676at 1966.093 kb on - strand, within Rru_A1676at 1966.093 kb on - strand, within Rru_A1676at 1966.093 kb on - strand, within Rru_A1676at 1966.394 kb on + strand, within Rru_A1676at 1966.394 kb on + strand, within Rru_A1676at 1966.412 kb on + strand, within Rru_A1676at 1966.412 kb on + strand, within Rru_A1676at 1966.423 kb on - strand, within Rru_A1676at 1966.464 kb on + strand, within Rru_A1676at 1966.464 kb on + strand, within Rru_A1676at 1966.464 kb on + strand, within Rru_A1676at 1966.465 kb on - strand, within Rru_A1676at 1966.465 kb on - strand, within Rru_A1676at 1966.466 kb on + strand, within Rru_A1676at 1966.466 kb on + strand, within Rru_A1676at 1966.467 kb on - strand, within Rru_A1676at 1966.898 kb on + strand, within Rru_A1677at 1967.345 kb on + strand, within Rru_A1677at 1967.345 kb on + strand, within Rru_A1677at 1967.345 kb on + strand, within Rru_A1677at 1967.345 kb on + strand, within Rru_A1677at 1967.346 kb on - strand, within Rru_A1677at 1967.346 kb on - strand, within Rru_A1677at 1967.346 kb on - strand, within Rru_A1677at 1967.346 kb on - strand, within Rru_A1677at 1967.346 kb on - strand, within Rru_A1677at 1967.472 kb on - strand, within Rru_A1677at 1967.472 kb on - strand, within Rru_A1677at 1967.490 kb on + strand, within Rru_A1677at 1967.490 kb on + strand, within Rru_A1677at 1967.551 kb on + strand, within Rru_A1677at 1967.551 kb on + strand, within Rru_A1677at 1967.561 kb on - strand, within Rru_A1677

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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1,964,613 + Rru_A1675 0.19 +2.6
1,964,614 - Rru_A1675 0.19 +0.0
1,964,614 - Rru_A1675 0.19 +3.6
1,964,757 + Rru_A1675 0.36 +3.6
1,964,757 + Rru_A1675 0.36 +2.6
1,964,757 + Rru_A1675 0.36 +4.2
1,964,757 + Rru_A1675 0.36 +1.0
1,964,757 + Rru_A1675 0.36 +0.0
1,964,757 + Rru_A1675 0.36 +4.2
1,964,757 + Rru_A1675 0.36 +3.7
1,964,757 + Rru_A1675 0.36 +3.6
1,964,807 + Rru_A1675 0.41 -1.6
1,964,924 + Rru_A1675 0.55 +2.2
1,964,924 + Rru_A1675 0.55 +2.7
1,964,924 + Rru_A1675 0.55 +2.3
1,964,924 + Rru_A1675 0.55 +3.0
1,964,924 + Rru_A1675 0.55 -1.0
1,964,924 + Rru_A1675 0.55 +1.8
1,964,925 - Rru_A1675 0.55 -1.6
1,965,065 + Rru_A1675 0.71 +0.6
1,965,065 + Rru_A1675 0.71 +2.2
1,965,066 - Rru_A1675 0.71 +3.6
1,965,066 - Rru_A1675 0.71 +2.0
1,965,066 - Rru_A1675 0.71 +5.5
1,965,066 - Rru_A1675 0.71 +0.0
1,965,067 + Rru_A1675 0.71 +2.3
1,965,067 + Rru_A1675 0.71 +0.0
1,965,263 + +0.4
1,965,264 - +2.3
1,965,264 - +3.7
1,965,264 - +0.0
1,965,264 - +4.2
1,965,388 + -2.7
1,965,391 + -1.0
1,965,422 + -1.0
1,965,423 - +0.0
1,965,423 - -2.0
1,965,645 + -3.0
1,965,645 + +0.0
1,965,646 - +0.0
1,966,092 + Rru_A1676 0.50 -2.0
1,966,092 + Rru_A1676 0.50 -1.6
1,966,092 + Rru_A1676 0.50 +1.6
1,966,092 + Rru_A1676 0.50 +0.0
1,966,092 + Rru_A1676 0.50 -2.0
1,966,092 + Rru_A1676 0.50 -2.2
1,966,092 + Rru_A1676 0.50 -1.7
1,966,092 + Rru_A1676 0.50 -2.1
1,966,092 + Rru_A1676 0.50 -1.6
1,966,092 + Rru_A1676 0.50 -1.0
1,966,093 - Rru_A1676 0.50 +0.6
1,966,093 - Rru_A1676 0.50 +0.0
1,966,093 - Rru_A1676 0.50 +0.0
1,966,093 - Rru_A1676 0.50 +0.0
1,966,394 + Rru_A1676 0.78 +1.0
1,966,394 + Rru_A1676 0.78 +0.0
1,966,412 + Rru_A1676 0.80 +0.0
1,966,412 + Rru_A1676 0.80 -1.3
1,966,423 - Rru_A1676 0.81 +0.0
1,966,464 + Rru_A1676 0.84 -2.8
1,966,464 + Rru_A1676 0.84 -0.8
1,966,464 + Rru_A1676 0.84 -0.6
1,966,465 - Rru_A1676 0.84 +0.0
1,966,465 - Rru_A1676 0.84 -1.0
1,966,466 + Rru_A1676 0.84 +0.0
1,966,466 + Rru_A1676 0.84 +0.0
1,966,467 - Rru_A1676 0.85 +0.0
1,966,898 + Rru_A1677 0.24 -2.3
1,967,345 + Rru_A1677 0.64 +0.0
1,967,345 + Rru_A1677 0.64 +0.0
1,967,345 + Rru_A1677 0.64 +0.0
1,967,345 + Rru_A1677 0.64 +0.0
1,967,346 - Rru_A1677 0.64 +0.0
1,967,346 - Rru_A1677 0.64 +0.0
1,967,346 - Rru_A1677 0.64 -1.6
1,967,346 - Rru_A1677 0.64 +0.0
1,967,346 - Rru_A1677 0.64 +1.0
1,967,472 - Rru_A1677 0.76 +0.0
1,967,472 - Rru_A1677 0.76 -2.0
1,967,490 + Rru_A1677 0.77 +0.0
1,967,490 + Rru_A1677 0.77 -2.0
1,967,551 + Rru_A1677 0.83 +0.0
1,967,551 + Rru_A1677 0.83 +0.0
1,967,561 - Rru_A1677 0.84 -1.6

Or see this region's nucleotide sequence