Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1483

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1482 and Rru_A1483 are separated by 19 nucleotidesRru_A1483 and Rru_A1484 are separated by 4 nucleotides Rru_A1482: Rru_A1482 - Undecaprenyl-phosphategalactosephosphotransferase (NCBI), at 1,748,483 to 1,749,841 _A1482 Rru_A1483: Rru_A1483 - Asparagine synthase, glutamine-hydrolyzing (NCBI), at 1,749,861 to 1,751,711 _A1483 Rru_A1484: Rru_A1484 - Glycosyl transferase WecB/TagA/CpsF (NCBI), at 1,751,716 to 1,753,440 _A1484 Position (kb) 1749 1750 1751 1752Strain fitness (log2 ratio) -3 -2 -1 0 1at 1748.937 kb on + strand, within Rru_A1482at 1748.938 kb on - strand, within Rru_A1482at 1749.239 kb on + strand, within Rru_A1482at 1749.240 kb on - strand, within Rru_A1482at 1749.240 kb on - strand, within Rru_A1482at 1749.568 kb on + strand, within Rru_A1482at 1749.568 kb on + strand, within Rru_A1482at 1749.568 kb on + strand, within Rru_A1482at 1749.569 kb on - strand, within Rru_A1482at 1749.569 kb on - strand, within Rru_A1482at 1749.569 kb on - strand, within Rru_A1482at 1749.569 kb on - strand, within Rru_A1482at 1749.569 kb on - strand, within Rru_A1482at 1749.634 kb on + strand, within Rru_A1482at 1749.634 kb on + strand, within Rru_A1482at 1749.634 kb on + strand, within Rru_A1482at 1749.635 kb on - strand, within Rru_A1482at 1749.638 kb on + strand, within Rru_A1482at 1749.639 kb on - strand, within Rru_A1482at 1749.743 kb on + strandat 1749.744 kb on - strandat 1749.756 kb on - strandat 1749.849 kb on - strandat 1749.849 kb on - strandat 1749.854 kb on - strandat 1749.854 kb on - strandat 1749.854 kb on - strandat 1749.854 kb on - strandat 1749.863 kb on - strandat 1749.863 kb on - strandat 1749.988 kb on + strandat 1749.988 kb on + strandat 1750.107 kb on + strand, within Rru_A1483at 1750.131 kb on + strand, within Rru_A1483at 1750.131 kb on + strand, within Rru_A1483at 1750.132 kb on - strand, within Rru_A1483at 1750.132 kb on - strand, within Rru_A1483at 1750.132 kb on - strand, within Rru_A1483at 1750.273 kb on + strand, within Rru_A1483at 1750.273 kb on + strand, within Rru_A1483at 1750.334 kb on - strand, within Rru_A1483at 1750.568 kb on + strand, within Rru_A1483at 1750.568 kb on + strand, within Rru_A1483at 1750.569 kb on - strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1751.266 kb on + strand, within Rru_A1483at 1751.266 kb on + strand, within Rru_A1483at 1751.266 kb on + strand, within Rru_A1483at 1751.266 kb on + strand, within Rru_A1483at 1751.266 kb on + strand, within Rru_A1483at 1751.267 kb on - strand, within Rru_A1483at 1751.467 kb on + strand, within Rru_A1483at 1751.467 kb on + strand, within Rru_A1483at 1751.467 kb on + strand, within Rru_A1483at 1751.467 kb on + strand, within Rru_A1483at 1751.467 kb on + strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.472 kb on - strand, within Rru_A1483at 1751.472 kb on - strand, within Rru_A1483at 1751.472 kb on - strand, within Rru_A1483at 1751.472 kb on - strand, within Rru_A1483at 1751.472 kb on - strand, within Rru_A1483at 1751.473 kb on + strand, within Rru_A1483at 1751.474 kb on - strand, within Rru_A1483at 1751.474 kb on - strand, within Rru_A1483at 1751.717 kb on + strandat 1751.717 kb on + strandat 1751.717 kb on + strandat 1751.718 kb on - strandat 1751.718 kb on - strandat 1751.718 kb on - strandat 1751.718 kb on - strandat 1751.718 kb on - strandat 1751.930 kb on + strand, within Rru_A1484at 1751.930 kb on + strand, within Rru_A1484at 1752.065 kb on + strand, within Rru_A1484at 1752.065 kb on + strand, within Rru_A1484at 1752.065 kb on + strand, within Rru_A1484at 1752.066 kb on - strand, within Rru_A1484at 1752.160 kb on - strand, within Rru_A1484at 1752.160 kb on - strand, within Rru_A1484at 1752.161 kb on + strand, within Rru_A1484at 1752.161 kb on + strand, within Rru_A1484at 1752.161 kb on + strand, within Rru_A1484at 1752.161 kb on + strand, within Rru_A1484at 1752.162 kb on - strand, within Rru_A1484at 1752.162 kb on - strand, within Rru_A1484at 1752.162 kb on - strand, within Rru_A1484at 1752.294 kb on + strand, within Rru_A1484at 1752.295 kb on - strand, within Rru_A1484at 1752.363 kb on + strand, within Rru_A1484at 1752.376 kb on + strand, within Rru_A1484at 1752.376 kb on + strand, within Rru_A1484at 1752.376 kb on + strand, within Rru_A1484at 1752.376 kb on + strand, within Rru_A1484at 1752.377 kb on - strand, within Rru_A1484at 1752.377 kb on - strand, within Rru_A1484

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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1,748,937 + Rru_A1482 0.33 -0.5
1,748,938 - Rru_A1482 0.33 -1.0
1,749,239 + Rru_A1482 0.56 +0.0
1,749,240 - Rru_A1482 0.56 +0.0
1,749,240 - Rru_A1482 0.56 +0.0
1,749,568 + Rru_A1482 0.80 -2.0
1,749,568 + Rru_A1482 0.80 +0.8
1,749,568 + Rru_A1482 0.80 -1.4
1,749,569 - Rru_A1482 0.80 -2.8
1,749,569 - Rru_A1482 0.80 -1.0
1,749,569 - Rru_A1482 0.80 -0.7
1,749,569 - Rru_A1482 0.80 -0.8
1,749,569 - Rru_A1482 0.80 -1.5
1,749,634 + Rru_A1482 0.85 -1.7
1,749,634 + Rru_A1482 0.85 +0.0
1,749,634 + Rru_A1482 0.85 +0.0
1,749,635 - Rru_A1482 0.85 -1.5
1,749,638 + Rru_A1482 0.85 +1.0
1,749,639 - Rru_A1482 0.85 -1.0
1,749,743 + -1.0
1,749,744 - +0.0
1,749,756 - +0.0
1,749,849 - -1.0
1,749,849 - +0.0
1,749,854 - -1.8
1,749,854 - +0.0
1,749,854 - -1.5
1,749,854 - +0.0
1,749,863 - -3.1
1,749,863 - -1.0
1,749,988 + -2.0
1,749,988 + +0.0
1,750,107 + Rru_A1483 0.13 -1.3
1,750,131 + Rru_A1483 0.15 +1.6
1,750,131 + Rru_A1483 0.15 -0.5
1,750,132 - Rru_A1483 0.15 +0.0
1,750,132 - Rru_A1483 0.15 +0.0
1,750,132 - Rru_A1483 0.15 -1.2
1,750,273 + Rru_A1483 0.22 -2.3
1,750,273 + Rru_A1483 0.22 +0.0
1,750,334 - Rru_A1483 0.26 -2.0
1,750,568 + Rru_A1483 0.38 -2.0
1,750,568 + Rru_A1483 0.38 -1.0
1,750,569 - Rru_A1483 0.38 -2.6
1,750,834 + Rru_A1483 0.53 +0.0
1,750,834 + Rru_A1483 0.53 +0.0
1,750,834 + Rru_A1483 0.53 -3.1
1,750,834 + Rru_A1483 0.53 +0.0
1,750,834 + Rru_A1483 0.53 -1.0
1,750,834 + Rru_A1483 0.53 +0.0
1,750,834 + Rru_A1483 0.53 -1.5
1,750,834 + Rru_A1483 0.53 +0.0
1,750,834 + Rru_A1483 0.53 -2.5
1,750,835 - Rru_A1483 0.53 -2.5
1,750,835 - Rru_A1483 0.53 -2.5
1,750,835 - Rru_A1483 0.53 +0.0
1,750,835 - Rru_A1483 0.53 +1.0
1,750,835 - Rru_A1483 0.53 -1.3
1,750,835 - Rru_A1483 0.53 +0.0
1,750,835 - Rru_A1483 0.53 -1.2
1,751,266 + Rru_A1483 0.76 -1.0
1,751,266 + Rru_A1483 0.76 -2.3
1,751,266 + Rru_A1483 0.76 +0.0
1,751,266 + Rru_A1483 0.76 +0.0
1,751,266 + Rru_A1483 0.76 -0.5
1,751,267 - Rru_A1483 0.76 -2.0
1,751,467 + Rru_A1483 0.87 -1.0
1,751,467 + Rru_A1483 0.87 -0.5
1,751,467 + Rru_A1483 0.87 -1.0
1,751,467 + Rru_A1483 0.87 -1.0
1,751,467 + Rru_A1483 0.87 -2.0
1,751,468 - Rru_A1483 0.87 +0.0
1,751,468 - Rru_A1483 0.87 -1.0
1,751,468 - Rru_A1483 0.87 -2.5
1,751,468 - Rru_A1483 0.87 -2.2
1,751,468 - Rru_A1483 0.87 +0.0
1,751,468 - Rru_A1483 0.87 +0.8
1,751,468 - Rru_A1483 0.87 +0.0
1,751,468 - Rru_A1483 0.87 -1.0
1,751,468 - Rru_A1483 0.87 +0.0
1,751,468 - Rru_A1483 0.87 +0.0
1,751,471 + Rru_A1483 0.87 +1.0
1,751,471 + Rru_A1483 0.87 -1.0
1,751,471 + Rru_A1483 0.87 +1.0
1,751,471 + Rru_A1483 0.87 +0.0
1,751,471 + Rru_A1483 0.87 -2.5
1,751,471 + Rru_A1483 0.87 -2.5
1,751,472 - Rru_A1483 0.87 -2.0
1,751,472 - Rru_A1483 0.87 +0.0
1,751,472 - Rru_A1483 0.87 -2.0
1,751,472 - Rru_A1483 0.87 -1.7
1,751,472 - Rru_A1483 0.87 +0.0
1,751,473 + Rru_A1483 0.87 -0.5
1,751,474 - Rru_A1483 0.87 +0.0
1,751,474 - Rru_A1483 0.87 -1.5
1,751,717 + +0.0
1,751,717 + +0.0
1,751,717 + -0.4
1,751,718 - +0.0
1,751,718 - +0.0
1,751,718 - -1.0
1,751,718 - +0.0
1,751,718 - +1.6
1,751,930 + Rru_A1484 0.12 -1.2
1,751,930 + Rru_A1484 0.12 -0.5
1,752,065 + Rru_A1484 0.20 -1.6
1,752,065 + Rru_A1484 0.20 +1.0
1,752,065 + Rru_A1484 0.20 -1.0
1,752,066 - Rru_A1484 0.20 +0.0
1,752,160 - Rru_A1484 0.26 +0.0
1,752,160 - Rru_A1484 0.26 -2.4
1,752,161 + Rru_A1484 0.26 -0.5
1,752,161 + Rru_A1484 0.26 -1.6
1,752,161 + Rru_A1484 0.26 -1.6
1,752,161 + Rru_A1484 0.26 +0.0
1,752,162 - Rru_A1484 0.26 +1.0
1,752,162 - Rru_A1484 0.26 +1.0
1,752,162 - Rru_A1484 0.26 +0.0
1,752,294 + Rru_A1484 0.34 -1.5
1,752,295 - Rru_A1484 0.34 +0.0
1,752,363 + Rru_A1484 0.38 +0.0
1,752,376 + Rru_A1484 0.38 -1.3
1,752,376 + Rru_A1484 0.38 -0.8
1,752,376 + Rru_A1484 0.38 -1.0
1,752,376 + Rru_A1484 0.38 -1.0
1,752,377 - Rru_A1484 0.38 -2.7
1,752,377 - Rru_A1484 0.38 +0.0

Or see this region's nucleotide sequence