Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1372

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1370 and Rru_A1371 are separated by 21 nucleotidesRru_A1371 and Rru_A1372 overlap by 4 nucleotidesRru_A1372 and Rru_A1373 are separated by 6 nucleotidesRru_A1373 and Rru_A1374 are separated by 29 nucleotides Rru_A1370: Rru_A1370 - hypothetical protein (NCBI), at 1,614,171 to 1,614,836 _A1370 Rru_A1371: Rru_A1371 - hypothetical protein (NCBI), at 1,614,858 to 1,615,130 _A1371 Rru_A1372: Rru_A1372 - hypothetical protein (NCBI), at 1,615,127 to 1,615,981 _A1372 Rru_A1373: Rru_A1373 - Peptidase C14, caspase catalytic subunit p20 (NCBI), at 1,615,988 to 1,616,905 _A1373 Rru_A1374: Rru_A1374 - Peptidase C14, caspase catalytic subunit p20 (NCBI), at 1,616,935 to 1,617,840 _A1374 Position (kb) 1615 1616Strain fitness (log2 ratio) -3 -2 -1 0 1at 1614.415 kb on + strand, within Rru_A1370at 1614.427 kb on + strand, within Rru_A1370at 1614.427 kb on + strand, within Rru_A1370at 1614.433 kb on + strand, within Rru_A1370at 1614.434 kb on - strand, within Rru_A1370at 1614.532 kb on + strand, within Rru_A1370at 1614.533 kb on - strand, within Rru_A1370at 1614.742 kb on + strand, within Rru_A1370at 1614.777 kb on + strandat 1614.778 kb on - strandat 1614.778 kb on - strandat 1614.815 kb on + strandat 1614.815 kb on + strandat 1614.887 kb on + strand, within Rru_A1371at 1614.889 kb on + strand, within Rru_A1371at 1614.889 kb on + strand, within Rru_A1371at 1614.890 kb on - strand, within Rru_A1371at 1614.890 kb on - strand, within Rru_A1371at 1614.890 kb on - strand, within Rru_A1371at 1615.449 kb on + strand, within Rru_A1372at 1615.449 kb on + strand, within Rru_A1372at 1615.449 kb on + strand, within Rru_A1372at 1615.450 kb on - strand, within Rru_A1372at 1615.454 kb on + strand, within Rru_A1372at 1615.454 kb on + strand, within Rru_A1372at 1615.454 kb on + strand, within Rru_A1372at 1615.454 kb on + strand, within Rru_A1372at 1615.454 kb on + strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.805 kb on - strand, within Rru_A1372at 1616.046 kb on + strandat 1616.047 kb on - strandat 1616.479 kb on + strand, within Rru_A1373at 1616.479 kb on + strand, within Rru_A1373at 1616.479 kb on + strand, within Rru_A1373at 1616.480 kb on - strand, within Rru_A1373at 1616.480 kb on - strand, within Rru_A1373at 1616.480 kb on - strand, within Rru_A1373at 1616.480 kb on - strand, within Rru_A1373at 1616.545 kb on - strand, within Rru_A1373at 1616.586 kb on + strand, within Rru_A1373at 1616.868 kb on + strandat 1616.868 kb on + strandat 1616.895 kb on + strandat 1616.896 kb on - strandat 1616.919 kb on + strandat 1616.936 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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1,614,415 + Rru_A1370 0.37 -0.5
1,614,427 + Rru_A1370 0.38 -0.8
1,614,427 + Rru_A1370 0.38 -1.5
1,614,433 + Rru_A1370 0.39 -1.5
1,614,434 - Rru_A1370 0.39 -1.0
1,614,532 + Rru_A1370 0.54 -1.9
1,614,533 - Rru_A1370 0.54 -3.0
1,614,742 + Rru_A1370 0.86 +0.1
1,614,777 + -2.4
1,614,778 - -0.3
1,614,778 - -1.9
1,614,815 + -0.9
1,614,815 + +0.1
1,614,887 + Rru_A1371 0.11 -0.9
1,614,889 + Rru_A1371 0.11 -1.1
1,614,889 + Rru_A1371 0.11 -0.4
1,614,890 - Rru_A1371 0.12 -0.3
1,614,890 - Rru_A1371 0.12 -1.4
1,614,890 - Rru_A1371 0.12 +1.7
1,615,449 + Rru_A1372 0.38 -1.8
1,615,449 + Rru_A1372 0.38 +0.1
1,615,449 + Rru_A1372 0.38 -0.7
1,615,450 - Rru_A1372 0.38 -1.0
1,615,454 + Rru_A1372 0.38 -2.3
1,615,454 + Rru_A1372 0.38 -0.3
1,615,454 + Rru_A1372 0.38 -2.0
1,615,454 + Rru_A1372 0.38 +0.1
1,615,454 + Rru_A1372 0.38 -0.9
1,615,455 - Rru_A1372 0.38 -1.9
1,615,455 - Rru_A1372 0.38 -1.2
1,615,455 - Rru_A1372 0.38 -1.9
1,615,455 - Rru_A1372 0.38 -1.9
1,615,455 - Rru_A1372 0.38 -1.4
1,615,455 - Rru_A1372 0.38 -0.9
1,615,805 - Rru_A1372 0.79 -1.9
1,616,046 + +1.1
1,616,047 - -1.3
1,616,479 + Rru_A1373 0.53 -2.4
1,616,479 + Rru_A1373 0.53 +0.1
1,616,479 + Rru_A1373 0.53 -2.2
1,616,480 - Rru_A1373 0.54 -1.5
1,616,480 - Rru_A1373 0.54 +0.9
1,616,480 - Rru_A1373 0.54 -1.7
1,616,480 - Rru_A1373 0.54 -2.2
1,616,545 - Rru_A1373 0.61 -0.9
1,616,586 + Rru_A1373 0.65 +0.1
1,616,868 + -1.7
1,616,868 + -2.1
1,616,895 + +0.1
1,616,896 - -1.4
1,616,919 + +0.1
1,616,936 + +0.6

Or see this region's nucleotide sequence