Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0779 and Rru_A0780 are separated by 3 nucleotides Rru_A0780 and Rru_A0781 overlap by 4 nucleotides
Rru_A0779: Rru_A0779 - extracellular solute-binding protein, family 3 (NCBI), at 931,092 to 932,144
_A0779
Rru_A0780: Rru_A0780 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 932,148 to 933,311
_A0780
Rru_A0781: Rru_A0781 - Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI), at 933,308 to 934,411
_A0781
Position (kb) 932
933
934 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 931.419 kb on - strand, within Rru_A0779 at 931.625 kb on + strand, within Rru_A0779 at 931.626 kb on - strand, within Rru_A0779 at 931.764 kb on + strand, within Rru_A0779 at 931.764 kb on + strand, within Rru_A0779 at 931.764 kb on + strand, within Rru_A0779 at 931.860 kb on + strand, within Rru_A0779 at 931.860 kb on + strand, within Rru_A0779 at 931.860 kb on + strand, within Rru_A0779 at 931.861 kb on - strand, within Rru_A0779 at 931.861 kb on - strand, within Rru_A0779 at 931.928 kb on + strand, within Rru_A0779 at 931.929 kb on - strand, within Rru_A0779 at 931.929 kb on - strand, within Rru_A0779 at 932.004 kb on + strand, within Rru_A0779 at 932.005 kb on - strand, within Rru_A0779 at 932.005 kb on - strand, within Rru_A0779 at 932.007 kb on - strand, within Rru_A0779 at 932.007 kb on - strand, within Rru_A0779 at 932.007 kb on - strand, within Rru_A0779 at 932.094 kb on - strand at 932.125 kb on - strand at 932.171 kb on - strand at 932.171 kb on - strand at 932.268 kb on - strand, within Rru_A0780 at 932.361 kb on + strand, within Rru_A0780 at 932.361 kb on + strand, within Rru_A0780 at 932.361 kb on + strand, within Rru_A0780 at 932.361 kb on + strand, within Rru_A0780 at 932.361 kb on + strand, within Rru_A0780 at 932.362 kb on - strand, within Rru_A0780 at 932.362 kb on - strand, within Rru_A0780 at 932.363 kb on + strand, within Rru_A0780 at 932.363 kb on + strand, within Rru_A0780 at 932.363 kb on + strand, within Rru_A0780 at 932.363 kb on + strand, within Rru_A0780 at 932.363 kb on + strand, within Rru_A0780 at 932.364 kb on - strand, within Rru_A0780 at 932.364 kb on - strand, within Rru_A0780 at 932.364 kb on - strand, within Rru_A0780 at 932.364 kb on - strand, within Rru_A0780 at 932.379 kb on + strand, within Rru_A0780 at 932.379 kb on + strand, within Rru_A0780 at 932.379 kb on + strand, within Rru_A0780 at 932.379 kb on + strand, within Rru_A0780 at 932.380 kb on - strand, within Rru_A0780 at 932.520 kb on + strand, within Rru_A0780 at 932.520 kb on + strand, within Rru_A0780 at 932.521 kb on - strand, within Rru_A0780 at 932.521 kb on - strand, within Rru_A0780 at 932.521 kb on - strand, within Rru_A0780 at 932.521 kb on - strand, within Rru_A0780 at 932.541 kb on - strand, within Rru_A0780 at 932.652 kb on + strand, within Rru_A0780 at 932.652 kb on + strand, within Rru_A0780 at 932.652 kb on + strand, within Rru_A0780 at 932.653 kb on - strand, within Rru_A0780 at 932.653 kb on - strand, within Rru_A0780 at 932.653 kb on - strand, within Rru_A0780 at 932.653 kb on - strand, within Rru_A0780 at 932.654 kb on + strand, within Rru_A0780 at 932.654 kb on + strand, within Rru_A0780 at 932.654 kb on + strand, within Rru_A0780 at 932.654 kb on + strand, within Rru_A0780 at 933.111 kb on + strand, within Rru_A0780 at 933.183 kb on - strand, within Rru_A0780 at 933.183 kb on - strand, within Rru_A0780 at 933.241 kb on - strand at 933.241 kb on - strand at 933.364 kb on + strand at 933.421 kb on + strand, within Rru_A0781 at 933.421 kb on + strand, within Rru_A0781 at 933.421 kb on + strand, within Rru_A0781 at 933.421 kb on + strand, within Rru_A0781 at 933.421 kb on + strand, within Rru_A0781 at 933.422 kb on - strand, within Rru_A0781 at 933.422 kb on - strand, within Rru_A0781 at 933.422 kb on - strand, within Rru_A0781 at 933.422 kb on - strand, within Rru_A0781 at 933.944 kb on + strand, within Rru_A0781 at 933.944 kb on + strand, within Rru_A0781 at 933.944 kb on + strand, within Rru_A0781 at 933.944 kb on + strand, within Rru_A0781 at 933.945 kb on - strand, within Rru_A0781 at 933.945 kb on - strand, within Rru_A0781 at 934.044 kb on - strand, within Rru_A0781 at 934.044 kb on - strand, within Rru_A0781 at 934.094 kb on + strand, within Rru_A0781 at 934.094 kb on + strand, within Rru_A0781 at 934.095 kb on - strand, within Rru_A0781 at 934.095 kb on - strand, within Rru_A0781 at 934.125 kb on - strand, within Rru_A0781 at 934.302 kb on - strand at 934.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 931,419 - Rru_A0779 0.31 +0.1 931,625 + Rru_A0779 0.51 -0.9 931,626 - Rru_A0779 0.51 -1.3 931,764 + Rru_A0779 0.64 -3.7 931,764 + Rru_A0779 0.64 -1.5 931,764 + Rru_A0779 0.64 -1.3 931,860 + Rru_A0779 0.73 -0.9 931,860 + Rru_A0779 0.73 -0.1 931,860 + Rru_A0779 0.73 +0.1 931,861 - Rru_A0779 0.73 +0.1 931,861 - Rru_A0779 0.73 -1.4 931,928 + Rru_A0779 0.79 -2.5 931,929 - Rru_A0779 0.79 +0.1 931,929 - Rru_A0779 0.79 -2.0 932,004 + Rru_A0779 0.87 +0.5 932,005 - Rru_A0779 0.87 +0.9 932,005 - Rru_A0779 0.87 -0.7 932,007 - Rru_A0779 0.87 +0.1 932,007 - Rru_A0779 0.87 +0.1 932,007 - Rru_A0779 0.87 +1.7 932,094 - -0.9 932,125 - -0.4 932,171 - +0.9 932,171 - -0.5 932,268 - Rru_A0780 0.10 +1.7 932,361 + Rru_A0780 0.18 -1.2 932,361 + Rru_A0780 0.18 +0.1 932,361 + Rru_A0780 0.18 -1.3 932,361 + Rru_A0780 0.18 -0.7 932,361 + Rru_A0780 0.18 -1.7 932,362 - Rru_A0780 0.18 +1.0 932,362 - Rru_A0780 0.18 +0.1 932,363 + Rru_A0780 0.18 +0.1 932,363 + Rru_A0780 0.18 -0.1 932,363 + Rru_A0780 0.18 -1.3 932,363 + Rru_A0780 0.18 -1.5 932,363 + Rru_A0780 0.18 -1.6 932,364 - Rru_A0780 0.19 -0.9 932,364 - Rru_A0780 0.19 +0.1 932,364 - Rru_A0780 0.19 -2.6 932,364 - Rru_A0780 0.19 -1.3 932,379 + Rru_A0780 0.20 -1.5 932,379 + Rru_A0780 0.20 +0.1 932,379 + Rru_A0780 0.20 -1.0 932,379 + Rru_A0780 0.20 -0.9 932,380 - Rru_A0780 0.20 +0.1 932,520 + Rru_A0780 0.32 -1.9 932,520 + Rru_A0780 0.32 +0.1 932,521 - Rru_A0780 0.32 +0.1 932,521 - Rru_A0780 0.32 -2.1 932,521 - Rru_A0780 0.32 +0.1 932,521 - Rru_A0780 0.32 -0.5 932,541 - Rru_A0780 0.34 -0.7 932,652 + Rru_A0780 0.43 -1.9 932,652 + Rru_A0780 0.43 -0.9 932,652 + Rru_A0780 0.43 -1.1 932,653 - Rru_A0780 0.43 -2.3 932,653 - Rru_A0780 0.43 +0.1 932,653 - Rru_A0780 0.43 -1.0 932,653 - Rru_A0780 0.43 -3.2 932,654 + Rru_A0780 0.43 -1.5 932,654 + Rru_A0780 0.43 -0.3 932,654 + Rru_A0780 0.43 +0.1 932,654 + Rru_A0780 0.43 +0.1 933,111 + Rru_A0780 0.83 +0.1 933,183 - Rru_A0780 0.89 +0.1 933,183 - Rru_A0780 0.89 -1.5 933,241 - -0.5 933,241 - -2.5 933,364 + -2.1 933,421 + Rru_A0781 0.10 +0.9 933,421 + Rru_A0781 0.10 +0.1 933,421 + Rru_A0781 0.10 -1.1 933,421 + Rru_A0781 0.10 -1.3 933,421 + Rru_A0781 0.10 -1.5 933,422 - Rru_A0781 0.10 -2.9 933,422 - Rru_A0781 0.10 +0.1 933,422 - Rru_A0781 0.10 -2.6 933,422 - Rru_A0781 0.10 -1.1 933,944 + Rru_A0781 0.58 -0.9 933,944 + Rru_A0781 0.58 -0.5 933,944 + Rru_A0781 0.58 -1.9 933,944 + Rru_A0781 0.58 +0.1 933,945 - Rru_A0781 0.58 +0.1 933,945 - Rru_A0781 0.58 -2.0 934,044 - Rru_A0781 0.67 -1.3 934,044 - Rru_A0781 0.67 +0.1 934,094 + Rru_A0781 0.71 +0.1 934,094 + Rru_A0781 0.71 +0.1 934,095 - Rru_A0781 0.71 +0.1 934,095 - Rru_A0781 0.71 -1.8 934,125 - Rru_A0781 0.74 +0.1 934,302 - -1.6 934,302 - -1.3
Or see this region's nucleotide sequence