Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0753 and Rru_A0754 overlap by 4 nucleotides Rru_A0754 and Rru_A0755 are separated by 63 nucleotides
Rru_A0753: Rru_A0753 - Chaperone clpB (NCBI), at 882,809 to 885,421
_A0753
Rru_A0754: Rru_A0754 - hypothetical protein (NCBI), at 885,418 to 886,488
_A0754
Rru_A0755: Rru_A0755 - chemotaxis sensory transducer (NCBI), at 886,552 to 888,255
_A0755
Position (kb) 885
886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 884.729 kb on + strand, within Rru_A0753 at 884.729 kb on + strand, within Rru_A0753 at 884.729 kb on + strand, within Rru_A0753 at 884.729 kb on + strand, within Rru_A0753 at 884.729 kb on + strand, within Rru_A0753 at 884.730 kb on - strand, within Rru_A0753 at 884.730 kb on - strand, within Rru_A0753 at 884.730 kb on - strand, within Rru_A0753 at 884.730 kb on - strand, within Rru_A0753 at 884.777 kb on + strand, within Rru_A0753 at 884.778 kb on - strand, within Rru_A0753 at 884.778 kb on - strand, within Rru_A0753 at 884.832 kb on - strand, within Rru_A0753 at 884.953 kb on + strand, within Rru_A0753 at 884.954 kb on - strand, within Rru_A0753 at 885.242 kb on + strand at 885.243 kb on - strand at 885.243 kb on - strand at 885.243 kb on - strand at 885.254 kb on + strand at 885.254 kb on + strand at 885.255 kb on - strand at 885.255 kb on - strand at 885.598 kb on + strand, within Rru_A0754 at 885.598 kb on + strand, within Rru_A0754 at 885.598 kb on + strand, within Rru_A0754 at 885.670 kb on - strand, within Rru_A0754 at 885.670 kb on - strand, within Rru_A0754 at 885.670 kb on - strand, within Rru_A0754 at 886.015 kb on + strand, within Rru_A0754 at 886.015 kb on + strand, within Rru_A0754 at 886.016 kb on - strand, within Rru_A0754 at 886.016 kb on - strand, within Rru_A0754 at 886.016 kb on - strand, within Rru_A0754 at 886.093 kb on - strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.420 kb on + strand at 886.420 kb on + strand at 886.421 kb on - strand at 886.421 kb on - strand at 886.562 kb on + strand at 886.563 kb on - strand at 886.671 kb on + strand at 886.671 kb on + strand at 886.698 kb on + strand at 886.699 kb on - strand at 886.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 884,729 + Rru_A0753 0.73 +0.1 884,729 + Rru_A0753 0.73 +0.1 884,729 + Rru_A0753 0.73 +0.1 884,729 + Rru_A0753 0.73 +0.1 884,729 + Rru_A0753 0.73 +0.1 884,730 - Rru_A0753 0.74 +0.1 884,730 - Rru_A0753 0.74 -1.2 884,730 - Rru_A0753 0.74 +0.1 884,730 - Rru_A0753 0.74 -0.9 884,777 + Rru_A0753 0.75 -0.9 884,778 - Rru_A0753 0.75 -0.3 884,778 - Rru_A0753 0.75 -0.9 884,832 - Rru_A0753 0.77 +0.1 884,953 + Rru_A0753 0.82 +0.1 884,954 - Rru_A0753 0.82 +0.1 885,242 + +0.1 885,243 - -1.6 885,243 - +0.1 885,243 - -0.9 885,254 + -1.5 885,254 + +0.1 885,255 - +0.1 885,255 - +0.1 885,598 + Rru_A0754 0.17 -2.8 885,598 + Rru_A0754 0.17 +0.1 885,598 + Rru_A0754 0.17 -0.8 885,670 - Rru_A0754 0.24 +0.1 885,670 - Rru_A0754 0.24 -2.0 885,670 - Rru_A0754 0.24 -0.9 886,015 + Rru_A0754 0.56 +0.1 886,015 + Rru_A0754 0.56 -0.2 886,016 - Rru_A0754 0.56 -0.9 886,016 - Rru_A0754 0.56 +1.1 886,016 - Rru_A0754 0.56 -1.9 886,093 - Rru_A0754 0.63 -1.9 886,201 + Rru_A0754 0.73 -2.3 886,201 + Rru_A0754 0.73 +1.1 886,201 + Rru_A0754 0.73 +0.1 886,201 + Rru_A0754 0.73 +1.1 886,420 + +0.1 886,420 + -1.7 886,421 - -2.6 886,421 - -0.9 886,562 + -1.3 886,563 - +0.1 886,671 + -0.5 886,671 + +0.1 886,698 + -0.6 886,699 - +0.1 886,715 - +0.1
Or see this region's nucleotide sequence