Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0734

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0732 and Rru_A0733 overlap by 4 nucleotidesRru_A0733 and Rru_A0734 are separated by 114 nucleotidesRru_A0734 and Rru_A0735 are separated by 28 nucleotidesRru_A0735 and Rru_A0736 are separated by 23 nucleotides Rru_A0732: Rru_A0732 - DNA repair protein RadC (NCBI), at 859,390 to 860,121 _A0732 Rru_A0733: Rru_A0733 - Peptidase M24A, methionine aminopeptidase, subfamily 1 (NCBI), at 860,118 to 860,933 _A0733 Rru_A0734: Rru_A0734 - hypothetical protein (NCBI), at 861,048 to 861,503 _A0734 Rru_A0735: Rru_A0735 - Sugar fermentation stimulation protein (NCBI), at 861,532 to 862,269 _A0735 Rru_A0736: Rru_A0736 - hypothetical protein (NCBI), at 862,293 to 863,219 _A0736 Position (kb) 861 862Strain fitness (log2 ratio) -3 -2 -1 0 1at 860.048 kb on + strandat 860.048 kb on + strandat 860.049 kb on - strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 861.033 kb on + strandat 861.034 kb on - strandat 861.108 kb on + strand, within Rru_A0734at 861.204 kb on + strand, within Rru_A0734at 861.371 kb on + strand, within Rru_A0734at 861.371 kb on + strand, within Rru_A0734at 861.371 kb on + strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.374 kb on - strand, within Rru_A0734at 861.374 kb on - strand, within Rru_A0734at 861.374 kb on - strand, within Rru_A0734at 861.425 kb on - strand, within Rru_A0734at 861.605 kb on + strandat 861.606 kb on - strand, within Rru_A0735at 861.606 kb on - strand, within Rru_A0735at 861.651 kb on - strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.711 kb on - strand, within Rru_A0735at 861.711 kb on - strand, within Rru_A0735at 861.857 kb on + strand, within Rru_A0735at 861.857 kb on + strand, within Rru_A0735at 861.857 kb on + strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 862.044 kb on - strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.223 kb on + strandat 862.223 kb on + strandat 862.224 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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860,048 + +0.1
860,048 + +0.1
860,049 - -2.7
860,975 + -1.5
860,975 + -1.3
860,975 + +0.1
860,975 + -1.5
860,975 + -1.5
860,975 + -2.4
860,975 + -3.1
860,975 + +0.1
860,975 + -0.5
860,977 + +0.1
860,977 + -0.3
860,977 + +0.1
860,977 + +0.1
860,977 + +0.1
860,977 + +0.1
860,978 - +0.1
860,978 - +0.1
860,978 - +0.1
860,978 - +0.1
860,978 - +0.1
860,978 - +0.1
861,033 + -1.5
861,034 - -1.7
861,108 + Rru_A0734 0.13 -1.1
861,204 + Rru_A0734 0.34 -1.5
861,371 + Rru_A0734 0.71 -2.3
861,371 + Rru_A0734 0.71 +0.1
861,371 + Rru_A0734 0.71 -1.9
861,372 - Rru_A0734 0.71 -0.9
861,372 - Rru_A0734 0.71 +0.1
861,372 - Rru_A0734 0.71 -0.4
861,372 - Rru_A0734 0.71 +0.1
861,372 - Rru_A0734 0.71 -0.9
861,372 - Rru_A0734 0.71 +0.1
861,374 - Rru_A0734 0.71 +0.1
861,374 - Rru_A0734 0.71 -0.8
861,374 - Rru_A0734 0.71 -1.9
861,425 - Rru_A0734 0.83 -1.5
861,605 + -1.2
861,606 - Rru_A0735 0.10 -2.9
861,606 - Rru_A0735 0.10 +0.1
861,651 - Rru_A0735 0.16 -1.3
861,710 + Rru_A0735 0.24 -0.9
861,710 + Rru_A0735 0.24 -3.5
861,710 + Rru_A0735 0.24 -1.6
861,710 + Rru_A0735 0.24 -2.7
861,711 - Rru_A0735 0.24 -2.9
861,711 - Rru_A0735 0.24 +0.1
861,857 + Rru_A0735 0.44 +0.1
861,857 + Rru_A0735 0.44 -1.5
861,857 + Rru_A0735 0.44 -2.2
861,858 - Rru_A0735 0.44 -2.1
861,858 - Rru_A0735 0.44 +0.1
861,858 - Rru_A0735 0.44 -2.2
861,858 - Rru_A0735 0.44 +0.1
861,858 - Rru_A0735 0.44 -1.4
862,044 - Rru_A0735 0.69 -1.5
862,076 + Rru_A0735 0.74 -1.5
862,076 + Rru_A0735 0.74 -1.1
862,076 + Rru_A0735 0.74 +0.1
862,076 + Rru_A0735 0.74 -1.3
862,076 + Rru_A0735 0.74 -0.6
862,077 - Rru_A0735 0.74 -3.6
862,077 - Rru_A0735 0.74 +0.1
862,077 - Rru_A0735 0.74 -0.9
862,077 - Rru_A0735 0.74 -2.7
862,077 - Rru_A0735 0.74 +0.1
862,077 - Rru_A0735 0.74 +0.1
862,077 - Rru_A0735 0.74 -1.5
862,223 + +0.1
862,223 + +0.1
862,224 - +0.1

Or see this region's nucleotide sequence