Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0701

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0699 and Rru_A0700 are separated by 8 nucleotidesRru_A0700 and Rru_A0701 are separated by 343 nucleotidesRru_A0701 and Rru_A0702 are separated by 156 nucleotides Rru_A0699: Rru_A0699 - Plasmid stabilization system (NCBI), at 829,201 to 829,515 _A0699 Rru_A0700: Rru_A0700 - Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI), at 829,524 to 829,766 _A0700 Rru_A0701: Rru_A0701 - Ribosomal protein S4 (NCBI), at 830,110 to 830,724 _A0701 Rru_A0702: Rru_A0702 - Molybdate ABC transporter, ATP-binding protein (NCBI), at 830,881 to 831,993 _A0702 Position (kb) 830 831Strain fitness (log2 ratio) -3 -2 -1 0 1at 829.217 kb on + strandat 829.217 kb on + strandat 829.218 kb on - strandat 829.220 kb on + strandat 829.220 kb on + strandat 829.221 kb on - strandat 829.221 kb on - strandat 829.221 kb on - strandat 829.261 kb on + strand, within Rru_A0699at 829.262 kb on - strand, within Rru_A0699at 829.262 kb on - strand, within Rru_A0699at 829.272 kb on + strand, within Rru_A0699at 829.273 kb on - strand, within Rru_A0699at 829.302 kb on - strand, within Rru_A0699at 829.419 kb on - strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.460 kb on + strand, within Rru_A0699at 829.460 kb on + strand, within Rru_A0699at 829.460 kb on + strand, within Rru_A0699at 829.461 kb on - strand, within Rru_A0699at 829.461 kb on - strand, within Rru_A0699at 829.461 kb on - strand, within Rru_A0699at 829.729 kb on + strand, within Rru_A0700at 829.783 kb on + strandat 829.784 kb on - strandat 829.808 kb on + strandat 829.808 kb on + strandat 829.808 kb on + strandat 829.809 kb on - strandat 829.809 kb on - strandat 829.809 kb on - strandat 829.809 kb on - strandat 829.810 kb on + strandat 829.810 kb on + strandat 829.811 kb on - strandat 829.811 kb on - strandat 829.811 kb on - strandat 829.811 kb on - strandat 829.830 kb on + strandat 829.831 kb on - strandat 829.831 kb on - strandat 829.908 kb on + strandat 829.993 kb on + strandat 830.874 kb on + strandat 830.882 kb on + strandat 830.883 kb on - strandat 831.147 kb on + strand, within Rru_A0702at 831.148 kb on - strand, within Rru_A0702at 831.434 kb on + strand, within Rru_A0702at 831.435 kb on - strand, within Rru_A0702at 831.435 kb on - strand, within Rru_A0702at 831.435 kb on - strand, within Rru_A0702at 831.668 kb on + strand, within Rru_A0702at 831.723 kb on + strand, within Rru_A0702at 831.723 kb on + strand, within Rru_A0702at 831.724 kb on - strand, within Rru_A0702

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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829,217 + +0.1
829,217 + -0.9
829,218 - +0.8
829,220 + -3.2
829,220 + +0.1
829,221 - -2.2
829,221 - +0.1
829,221 - +0.1
829,261 + Rru_A0699 0.19 -2.2
829,262 - Rru_A0699 0.19 +0.1
829,262 - Rru_A0699 0.19 -2.4
829,272 + Rru_A0699 0.23 -0.6
829,273 - Rru_A0699 0.23 -1.9
829,302 - Rru_A0699 0.32 -1.1
829,419 - Rru_A0699 0.69 -1.1
829,421 + Rru_A0699 0.70 -2.4
829,421 + Rru_A0699 0.70 +0.1
829,421 + Rru_A0699 0.70 +0.1
829,421 + Rru_A0699 0.70 -1.2
829,421 + Rru_A0699 0.70 +0.1
829,421 + Rru_A0699 0.70 -0.9
829,421 + Rru_A0699 0.70 -2.3
829,460 + Rru_A0699 0.82 -0.9
829,460 + Rru_A0699 0.82 +0.1
829,460 + Rru_A0699 0.82 -2.1
829,461 - Rru_A0699 0.83 -0.9
829,461 - Rru_A0699 0.83 -1.5
829,461 - Rru_A0699 0.83 -2.7
829,729 + Rru_A0700 0.84 -0.9
829,783 + +0.1
829,784 - -2.0
829,808 + -1.3
829,808 + +1.1
829,808 + +0.1
829,809 - -0.9
829,809 - -1.9
829,809 - -2.1
829,809 - -1.9
829,810 + -0.9
829,810 + -0.5
829,811 - +0.1
829,811 - -0.2
829,811 - -1.2
829,811 - -2.8
829,830 + -0.9
829,831 - -0.9
829,831 - +0.1
829,908 + -1.7
829,993 + +0.5
830,874 + -1.2
830,882 + +0.1
830,883 - -2.5
831,147 + Rru_A0702 0.24 +0.1
831,148 - Rru_A0702 0.24 -2.1
831,434 + Rru_A0702 0.50 -0.5
831,435 - Rru_A0702 0.50 +0.5
831,435 - Rru_A0702 0.50 -1.8
831,435 - Rru_A0702 0.50 -0.9
831,668 + Rru_A0702 0.71 -1.3
831,723 + Rru_A0702 0.76 +0.1
831,723 + Rru_A0702 0.76 -0.9
831,724 - Rru_A0702 0.76 -2.0

Or see this region's nucleotide sequence