Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0693 and Rru_A0694 overlap by 8 nucleotides Rru_A0694 and Rru_A0695 are separated by 429 nucleotides Rru_A0695 and Rru_A0696 are separated by 4 nucleotides Rru_A0696 and Rru_A0697 overlap by 4 nucleotides
Rru_A0693: Rru_A0693 - Signal Transduction Histidine Kinase (NCBI), at 821,736 to 822,938
_A0693
Rru_A0694: Rru_A0694 - Response regulator receiver (CheY) and unknown domain protein (NCBI), at 822,931 to 823,374
_A0694
Rru_A0695: Rru_A0695 - 2-isopropylmalate synthase/homocitrate synthase (NCBI), at 823,804 to 825,405
_A0695
Rru_A0696: Rru_A0696 - RNA methyltransferase TrmH, group 1 (NCBI), at 825,410 to 826,249
_A0696
Rru_A0697: Rru_A0697 - Multi antimicrobial extrusion protein MatE (NCBI), at 826,246 to 827,652
_A0697
Position (kb) 823
824
825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 822.905 kb on + strand at 822.905 kb on + strand at 822.905 kb on + strand at 822.906 kb on - strand at 823.139 kb on + strand, within Rru_A0694 at 823.140 kb on - strand, within Rru_A0694 at 823.140 kb on - strand, within Rru_A0694 at 823.140 kb on - strand, within Rru_A0694 at 823.202 kb on + strand, within Rru_A0694 at 823.202 kb on + strand, within Rru_A0694 at 823.298 kb on + strand, within Rru_A0694 at 823.298 kb on + strand, within Rru_A0694 at 823.298 kb on + strand, within Rru_A0694 at 823.299 kb on - strand, within Rru_A0694 at 823.299 kb on - strand, within Rru_A0694 at 823.342 kb on + strand at 823.343 kb on - strand at 823.374 kb on + strand at 823.375 kb on - strand at 823.497 kb on + strand at 823.498 kb on - strand at 823.498 kb on - strand at 823.502 kb on - strand at 823.502 kb on - strand at 823.511 kb on - strand at 823.523 kb on - strand at 823.608 kb on + strand at 823.608 kb on + strand at 823.822 kb on + strand at 823.823 kb on - strand at 823.828 kb on + strand at 823.828 kb on + strand at 823.930 kb on + strand at 823.930 kb on + strand at 823.930 kb on + strand at 823.931 kb on - strand at 823.931 kb on - strand at 824.254 kb on + strand, within Rru_A0695 at 824.256 kb on + strand, within Rru_A0695 at 824.257 kb on - strand, within Rru_A0695 at 824.279 kb on + strand, within Rru_A0695 at 824.279 kb on + strand, within Rru_A0695 at 824.300 kb on - strand, within Rru_A0695 at 824.300 kb on - strand, within Rru_A0695 at 824.455 kb on - strand, within Rru_A0695 at 824.455 kb on - strand, within Rru_A0695 at 824.455 kb on - strand, within Rru_A0695 at 824.747 kb on - strand, within Rru_A0695 at 824.755 kb on - strand, within Rru_A0695 at 824.926 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.101 kb on - strand, within Rru_A0695 at 825.101 kb on - strand, within Rru_A0695 at 825.102 kb on + strand, within Rru_A0695 at 825.175 kb on + strand, within Rru_A0695 at 825.208 kb on + strand, within Rru_A0695 at 825.219 kb on + strand, within Rru_A0695 at 825.322 kb on - strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.338 kb on - strand at 825.340 kb on - strand at 825.340 kb on - strand at 825.364 kb on + strand at 825.364 kb on + strand at 825.364 kb on + strand at 825.365 kb on - strand at 825.366 kb on + strand at 825.366 kb on + strand at 825.367 kb on - strand at 825.407 kb on - strand at 825.872 kb on + strand, within Rru_A0696 at 825.923 kb on + strand, within Rru_A0696
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 822,905 + +0.1 822,905 + +0.1 822,905 + -0.8 822,906 - -0.9 823,139 + Rru_A0694 0.47 +0.1 823,140 - Rru_A0694 0.47 -1.5 823,140 - Rru_A0694 0.47 +0.1 823,140 - Rru_A0694 0.47 -1.8 823,202 + Rru_A0694 0.61 -0.9 823,202 + Rru_A0694 0.61 -0.9 823,298 + Rru_A0694 0.83 +0.1 823,298 + Rru_A0694 0.83 -1.0 823,298 + Rru_A0694 0.83 -1.5 823,299 - Rru_A0694 0.83 -1.5 823,299 - Rru_A0694 0.83 +0.1 823,342 + -1.9 823,343 - -1.6 823,374 + -2.1 823,375 - -0.5 823,497 + -1.5 823,498 - +0.1 823,498 - -2.1 823,502 - +0.1 823,502 - -1.2 823,511 - -0.9 823,523 - -1.1 823,608 + +0.1 823,608 + +0.1 823,822 + +0.1 823,823 - -0.9 823,828 + -2.1 823,828 + +0.1 823,930 + -3.5 823,930 + -1.6 823,930 + +0.1 823,931 - -1.1 823,931 - -0.2 824,254 + Rru_A0695 0.28 -1.5 824,256 + Rru_A0695 0.28 -0.9 824,257 - Rru_A0695 0.28 +0.1 824,279 + Rru_A0695 0.30 +0.1 824,279 + Rru_A0695 0.30 -0.9 824,300 - Rru_A0695 0.31 +0.1 824,300 - Rru_A0695 0.31 +0.1 824,455 - Rru_A0695 0.41 +0.1 824,455 - Rru_A0695 0.41 +0.1 824,455 - Rru_A0695 0.41 +0.1 824,747 - Rru_A0695 0.59 -1.5 824,755 - Rru_A0695 0.59 -1.8 824,926 + Rru_A0695 0.70 -0.8 825,100 + Rru_A0695 0.81 -1.5 825,100 + Rru_A0695 0.81 +0.1 825,100 + Rru_A0695 0.81 -0.5 825,100 + Rru_A0695 0.81 +1.4 825,101 - Rru_A0695 0.81 +0.1 825,101 - Rru_A0695 0.81 +0.1 825,102 + Rru_A0695 0.81 -1.5 825,175 + Rru_A0695 0.86 -1.4 825,208 + Rru_A0695 0.88 +0.1 825,219 + Rru_A0695 0.88 -2.0 825,322 - +1.7 825,337 + +0.1 825,337 + +0.1 825,337 + +0.1 825,337 + +0.1 825,338 - +0.5 825,340 - +0.1 825,340 - +0.1 825,364 + -0.5 825,364 + -2.0 825,364 + -2.1 825,365 - +0.1 825,366 + -1.3 825,366 + -2.2 825,367 - -0.9 825,407 - +0.1 825,872 + Rru_A0696 0.55 -1.4 825,923 + Rru_A0696 0.61 +0.1
Or see this region's nucleotide sequence