Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0690 and Rru_A0691 are separated by 113 nucleotides Rru_A0691 and Rru_A0692 are separated by 94 nucleotides
Rru_A0690: Rru_A0690 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 815,613 to 819,173
_A0690
Rru_A0691: Rru_A0691 - Predicted signal transduction protein (NCBI), at 819,287 to 820,453
_A0691
Rru_A0692: Rru_A0692 - Response regulator receiver domain protein (CheY) (NCBI), at 820,548 to 821,720
_A0692
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 818.451 kb on + strand, within Rru_A0690 at 818.451 kb on + strand, within Rru_A0690 at 818.451 kb on + strand, within Rru_A0690 at 818.452 kb on - strand, within Rru_A0690 at 818.452 kb on - strand, within Rru_A0690 at 818.454 kb on - strand, within Rru_A0690 at 818.454 kb on - strand, within Rru_A0690 at 818.463 kb on - strand, within Rru_A0690 at 818.582 kb on + strand, within Rru_A0690 at 818.583 kb on - strand, within Rru_A0690 at 818.590 kb on - strand, within Rru_A0690 at 819.171 kb on + strand at 819.172 kb on - strand at 819.222 kb on - strand at 819.226 kb on + strand at 819.226 kb on + strand at 819.262 kb on + strand at 819.263 kb on - strand at 819.319 kb on + strand at 819.320 kb on - strand at 819.320 kb on - strand at 819.540 kb on - strand, within Rru_A0691 at 819.587 kb on + strand, within Rru_A0691 at 819.587 kb on + strand, within Rru_A0691 at 819.587 kb on + strand, within Rru_A0691 at 819.587 kb on + strand, within Rru_A0691 at 819.587 kb on + strand, within Rru_A0691 at 819.588 kb on - strand, within Rru_A0691 at 819.588 kb on - strand, within Rru_A0691 at 819.725 kb on + strand, within Rru_A0691 at 819.726 kb on - strand, within Rru_A0691 at 819.726 kb on - strand, within Rru_A0691 at 819.766 kb on + strand, within Rru_A0691 at 819.767 kb on - strand, within Rru_A0691 at 819.767 kb on - strand, within Rru_A0691 at 820.278 kb on - strand, within Rru_A0691 at 820.278 kb on - strand, within Rru_A0691 at 820.324 kb on + strand, within Rru_A0691 at 820.324 kb on + strand, within Rru_A0691 at 820.324 kb on + strand, within Rru_A0691 at 820.324 kb on + strand, within Rru_A0691 at 820.324 kb on + strand, within Rru_A0691 at 820.325 kb on - strand, within Rru_A0691 at 820.325 kb on - strand, within Rru_A0691 at 820.325 kb on - strand, within Rru_A0691 at 820.328 kb on + strand, within Rru_A0691 at 820.328 kb on + strand, within Rru_A0691 at 820.328 kb on + strand, within Rru_A0691 at 820.328 kb on + strand, within Rru_A0691 at 820.328 kb on + strand, within Rru_A0691 at 820.328 kb on + strand, within Rru_A0691 at 820.328 kb on + strand, within Rru_A0691 at 820.328 kb on + strand, within Rru_A0691 at 820.329 kb on - strand, within Rru_A0691 at 820.329 kb on - strand, within Rru_A0691 at 820.329 kb on - strand, within Rru_A0691 at 820.410 kb on - strand at 820.911 kb on + strand, within Rru_A0692 at 820.982 kb on + strand, within Rru_A0692 at 820.983 kb on - strand, within Rru_A0692 at 820.983 kb on - strand, within Rru_A0692 at 820.983 kb on - strand, within Rru_A0692 at 820.983 kb on - strand, within Rru_A0692 at 820.998 kb on + strand, within Rru_A0692 at 820.998 kb on + strand, within Rru_A0692 at 821.011 kb on - strand, within Rru_A0692 at 821.234 kb on + strand, within Rru_A0692 at 821.234 kb on + strand, within Rru_A0692 at 821.235 kb on - strand, within Rru_A0692 at 821.268 kb on + strand, within Rru_A0692 at 821.269 kb on - strand, within Rru_A0692 at 821.269 kb on - strand, within Rru_A0692 at 821.269 kb on - strand, within Rru_A0692 at 821.269 kb on - strand, within Rru_A0692 at 821.442 kb on + strand, within Rru_A0692 at 821.442 kb on + strand, within Rru_A0692 at 821.442 kb on + strand, within Rru_A0692 at 821.442 kb on + strand, within Rru_A0692 at 821.442 kb on + strand, within Rru_A0692
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 818,451 + Rru_A0690 0.80 -1.9 818,451 + Rru_A0690 0.80 -0.8 818,451 + Rru_A0690 0.80 +1.1 818,452 - Rru_A0690 0.80 -1.1 818,452 - Rru_A0690 0.80 +0.1 818,454 - Rru_A0690 0.80 -1.9 818,454 - Rru_A0690 0.80 +0.1 818,463 - Rru_A0690 0.80 -1.0 818,582 + Rru_A0690 0.83 -1.4 818,583 - Rru_A0690 0.83 -2.1 818,590 - Rru_A0690 0.84 +0.1 819,171 + -1.9 819,172 - -2.1 819,222 - +0.1 819,226 + -2.5 819,226 + +0.1 819,262 + -0.2 819,263 - -1.5 819,319 + -1.5 819,320 - -0.7 819,320 - -1.9 819,540 - Rru_A0691 0.22 +0.1 819,587 + Rru_A0691 0.26 -1.2 819,587 + Rru_A0691 0.26 +0.1 819,587 + Rru_A0691 0.26 +0.1 819,587 + Rru_A0691 0.26 -1.3 819,587 + Rru_A0691 0.26 -1.3 819,588 - Rru_A0691 0.26 +0.1 819,588 - Rru_A0691 0.26 +0.1 819,725 + Rru_A0691 0.38 -1.6 819,726 - Rru_A0691 0.38 -2.1 819,726 - Rru_A0691 0.38 +0.1 819,766 + Rru_A0691 0.41 +0.1 819,767 - Rru_A0691 0.41 +0.1 819,767 - Rru_A0691 0.41 -1.5 820,278 - Rru_A0691 0.85 -2.7 820,278 - Rru_A0691 0.85 -1.9 820,324 + Rru_A0691 0.89 +0.1 820,324 + Rru_A0691 0.89 -1.0 820,324 + Rru_A0691 0.89 -1.5 820,324 + Rru_A0691 0.89 +0.1 820,324 + Rru_A0691 0.89 +0.1 820,325 - Rru_A0691 0.89 -2.1 820,325 - Rru_A0691 0.89 +0.1 820,325 - Rru_A0691 0.89 +0.1 820,328 + Rru_A0691 0.89 -1.5 820,328 + Rru_A0691 0.89 +0.1 820,328 + Rru_A0691 0.89 +0.1 820,328 + Rru_A0691 0.89 +0.1 820,328 + Rru_A0691 0.89 +0.1 820,328 + Rru_A0691 0.89 +0.1 820,328 + Rru_A0691 0.89 +0.1 820,328 + Rru_A0691 0.89 -0.6 820,329 - Rru_A0691 0.89 +0.1 820,329 - Rru_A0691 0.89 -0.9 820,329 - Rru_A0691 0.89 +0.1 820,410 - -0.9 820,911 + Rru_A0692 0.31 -0.6 820,982 + Rru_A0692 0.37 -0.9 820,983 - Rru_A0692 0.37 -0.8 820,983 - Rru_A0692 0.37 +0.1 820,983 - Rru_A0692 0.37 -0.9 820,983 - Rru_A0692 0.37 +0.1 820,998 + Rru_A0692 0.38 -1.7 820,998 + Rru_A0692 0.38 -0.9 821,011 - Rru_A0692 0.39 +1.5 821,234 + Rru_A0692 0.58 +0.1 821,234 + Rru_A0692 0.58 +0.1 821,235 - Rru_A0692 0.59 -1.8 821,268 + Rru_A0692 0.61 -2.8 821,269 - Rru_A0692 0.61 -1.5 821,269 - Rru_A0692 0.61 -1.5 821,269 - Rru_A0692 0.61 +0.1 821,269 - Rru_A0692 0.61 -1.4 821,442 + Rru_A0692 0.76 +0.1 821,442 + Rru_A0692 0.76 -0.7 821,442 + Rru_A0692 0.76 +0.1 821,442 + Rru_A0692 0.76 -0.7 821,442 + Rru_A0692 0.76 +0.1
Or see this region's nucleotide sequence