Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0672 and Rru_AR0017 are separated by 217 nucleotides Rru_AR0017 and Rru_A0673 are separated by 44 nucleotides Rru_A0673 and Rru_A0674 are separated by 57 nucleotides Rru_A0674 and Rru_A0675 are separated by 805 nucleotides
Rru_A0672: Rru_A0672 - hypothetical protein (NCBI), at 794,877 to 795,188
_A0672
Rru_AR0017: Rru_AR0017 - tRNA-Ser (NCBI), at 795,406 to 795,496
_AR0017
Rru_A0673: Rru_A0673 - hypothetical protein (NCBI), at 795,541 to 795,846
_A0673
Rru_A0674: Rru_A0674 - Phage integrase (NCBI), at 795,904 to 797,064
_A0674
Rru_A0675: Rru_A0675 - hypothetical protein (NCBI), at 797,870 to 798,844
_A0675
Position (kb) 795
796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 795.021 kb on - strand, within Rru_A0672 at 795.094 kb on + strand, within Rru_A0672 at 795.095 kb on - strand, within Rru_A0672 at 795.169 kb on - strand at 795.169 kb on - strand at 795.174 kb on - strand at 795.184 kb on - strand at 795.256 kb on + strand at 795.256 kb on + strand at 795.257 kb on - strand at 795.519 kb on + strand at 795.522 kb on + strand at 795.598 kb on + strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.629 kb on - strand, within Rru_A0673 at 795.629 kb on - strand, within Rru_A0673 at 795.793 kb on - strand, within Rru_A0673 at 795.837 kb on + strand at 795.837 kb on + strand at 795.838 kb on - strand at 795.840 kb on + strand at 795.840 kb on + strand at 795.841 kb on - strand at 795.841 kb on - strand at 795.928 kb on - strand at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.105 kb on - strand, within Rru_A0674 at 796.105 kb on - strand, within Rru_A0674 at 796.134 kb on - strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.346 kb on - strand, within Rru_A0674 at 796.346 kb on - strand, within Rru_A0674 at 796.346 kb on - strand, within Rru_A0674 at 796.346 kb on - strand, within Rru_A0674 at 796.349 kb on - strand, within Rru_A0674 at 796.366 kb on + strand, within Rru_A0674 at 796.366 kb on + strand, within Rru_A0674 at 796.367 kb on - strand, within Rru_A0674 at 796.367 kb on - strand, within Rru_A0674 at 796.422 kb on - strand, within Rru_A0674 at 796.528 kb on - strand, within Rru_A0674 at 796.528 kb on - strand, within Rru_A0674 at 796.543 kb on + strand, within Rru_A0674 at 796.544 kb on - strand, within Rru_A0674 at 796.615 kb on + strand, within Rru_A0674 at 796.616 kb on - strand, within Rru_A0674 at 796.822 kb on + strand, within Rru_A0674 at 796.823 kb on - strand, within Rru_A0674 at 796.823 kb on - strand, within Rru_A0674 at 796.823 kb on - strand, within Rru_A0674 at 796.824 kb on + strand, within Rru_A0674 at 796.824 kb on + strand, within Rru_A0674 at 796.824 kb on + strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.887 kb on + strand, within Rru_A0674 at 796.888 kb on - strand, within Rru_A0674 at 796.905 kb on + strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.975 kb on - strand at 796.990 kb on + strand at 797.002 kb on + strand at 797.003 kb on - strand at 797.124 kb on + strand at 797.127 kb on + strand at 797.127 kb on + strand at 797.128 kb on - strand at 797.146 kb on - strand at 797.179 kb on - strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.190 kb on - strand at 797.236 kb on + strand at 797.243 kb on + strand at 797.244 kb on - strand at 797.295 kb on + strand at 797.319 kb on - strand at 797.352 kb on + strand at 797.384 kb on + strand at 797.384 kb on + strand at 797.477 kb on + strand at 797.477 kb on + strand at 797.521 kb on + strand at 797.521 kb on + strand at 797.542 kb on + strand at 797.591 kb on + strand at 797.641 kb on + strand at 797.641 kb on + strand at 797.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 795,021 - Rru_A0672 0.46 +0.1 795,094 + Rru_A0672 0.70 -0.8 795,095 - Rru_A0672 0.70 -2.5 795,169 - +0.1 795,169 - +0.1 795,174 - +0.1 795,184 - +1.1 795,256 + -2.1 795,256 + -0.9 795,257 - -0.5 795,519 + +0.1 795,522 + +0.1 795,598 + Rru_A0673 0.19 -2.5 795,599 - Rru_A0673 0.19 -1.7 795,599 - Rru_A0673 0.19 -2.1 795,599 - Rru_A0673 0.19 -0.7 795,629 - Rru_A0673 0.29 -2.0 795,629 - Rru_A0673 0.29 -2.9 795,793 - Rru_A0673 0.82 +0.1 795,837 + -1.4 795,837 + -1.3 795,838 - +0.1 795,840 + -1.2 795,840 + -3.2 795,841 - +0.1 795,841 - +0.1 795,928 - -0.9 796,104 + Rru_A0674 0.17 +0.1 796,104 + Rru_A0674 0.17 +0.1 796,104 + Rru_A0674 0.17 -2.2 796,104 + Rru_A0674 0.17 -1.7 796,105 - Rru_A0674 0.17 -0.9 796,105 - Rru_A0674 0.17 -0.9 796,134 - Rru_A0674 0.20 +0.1 796,345 + Rru_A0674 0.38 +0.1 796,345 + Rru_A0674 0.38 -2.6 796,345 + Rru_A0674 0.38 -1.5 796,345 + Rru_A0674 0.38 -1.5 796,345 + Rru_A0674 0.38 +0.1 796,345 + Rru_A0674 0.38 -2.9 796,346 - Rru_A0674 0.38 -1.4 796,346 - Rru_A0674 0.38 -3.7 796,346 - Rru_A0674 0.38 -2.1 796,346 - Rru_A0674 0.38 -1.4 796,349 - Rru_A0674 0.38 +0.1 796,366 + Rru_A0674 0.40 +0.1 796,366 + Rru_A0674 0.40 +0.1 796,367 - Rru_A0674 0.40 +0.1 796,367 - Rru_A0674 0.40 -1.3 796,422 - Rru_A0674 0.45 -1.2 796,528 - Rru_A0674 0.54 -1.6 796,528 - Rru_A0674 0.54 -1.9 796,543 + Rru_A0674 0.55 +0.1 796,544 - Rru_A0674 0.55 +0.1 796,615 + Rru_A0674 0.61 -0.7 796,616 - Rru_A0674 0.61 -2.7 796,822 + Rru_A0674 0.79 -1.7 796,823 - Rru_A0674 0.79 +0.1 796,823 - Rru_A0674 0.79 -1.2 796,823 - Rru_A0674 0.79 +0.7 796,824 + Rru_A0674 0.79 +0.4 796,824 + Rru_A0674 0.79 -1.2 796,824 + Rru_A0674 0.79 +0.1 796,825 - Rru_A0674 0.79 -2.2 796,825 - Rru_A0674 0.79 -1.9 796,825 - Rru_A0674 0.79 -0.6 796,825 - Rru_A0674 0.79 +0.1 796,825 - Rru_A0674 0.79 +0.1 796,825 - Rru_A0674 0.79 +0.1 796,887 + Rru_A0674 0.85 -0.2 796,888 - Rru_A0674 0.85 -1.5 796,905 + Rru_A0674 0.86 -0.7 796,906 - Rru_A0674 0.86 -1.5 796,906 - Rru_A0674 0.86 +0.1 796,906 - Rru_A0674 0.86 -1.1 796,975 - -0.8 796,990 + -1.5 797,002 + +0.1 797,003 - +0.1 797,124 + +0.1 797,127 + +0.1 797,127 + -0.8 797,128 - +0.1 797,146 - -2.6 797,179 - -0.9 797,188 - +0.1 797,188 - -1.5 797,188 - -1.6 797,190 - +0.1 797,236 + +0.1 797,243 + -1.7 797,244 - -1.8 797,295 + +0.1 797,319 - -2.2 797,352 + -1.5 797,384 + -1.9 797,384 + -2.3 797,477 + +0.1 797,477 + +0.1 797,521 + +0.1 797,521 + +0.1 797,542 + +0.1 797,591 + -2.5 797,641 + -0.9 797,641 + +0.1 797,757 - +0.1
Or see this region's nucleotide sequence