Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0493

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0491 and Rru_A0492 overlap by 26 nucleotidesRru_A0492 and Rru_A0493 are separated by 67 nucleotidesRru_A0493 and Rru_A0494 are separated by 4 nucleotides Rru_A0491: Rru_A0491 - ABC transporter component (NCBI), at 577,210 to 578,013 _A0491 Rru_A0492: Rru_A0492 - hypothetical protein (NCBI), at 577,988 to 578,740 _A0492 Rru_A0493: Rru_A0493 - Phytoene desaturase (NCBI), at 578,808 to 580,331 _A0493 Rru_A0494: Rru_A0494 - Squalene/phytoene synthase (NCBI), at 580,336 to 581,364 _A0494 Position (kb) 578 579 580 581Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 577.824 kb on + strand, within Rru_A0491at 577.824 kb on + strand, within Rru_A0491at 577.825 kb on - strand, within Rru_A0491at 577.825 kb on - strand, within Rru_A0491at 577.912 kb on + strand, within Rru_A0491at 577.912 kb on + strand, within Rru_A0491at 577.989 kb on + strandat 577.989 kb on + strandat 577.990 kb on - strandat 578.047 kb on - strandat 578.080 kb on + strand, within Rru_A0492at 578.095 kb on - strand, within Rru_A0492at 578.284 kb on + strand, within Rru_A0492at 578.284 kb on + strand, within Rru_A0492at 578.284 kb on + strand, within Rru_A0492at 578.285 kb on - strand, within Rru_A0492at 578.285 kb on - strand, within Rru_A0492at 578.285 kb on - strand, within Rru_A0492at 578.764 kb on - strandat 578.764 kb on - strandat 578.777 kb on + strandat 578.778 kb on - strandat 578.796 kb on + strandat 579.111 kb on - strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.243 kb on + strand, within Rru_A0493at 579.243 kb on + strand, within Rru_A0493at 579.243 kb on + strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.245 kb on + strand, within Rru_A0493at 579.450 kb on + strand, within Rru_A0493at 579.451 kb on - strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.568 kb on - strand, within Rru_A0493at 579.568 kb on - strand, within Rru_A0493at 579.569 kb on + strand, within Rru_A0493at 579.753 kb on + strand, within Rru_A0493at 579.798 kb on + strand, within Rru_A0493at 579.799 kb on - strand, within Rru_A0493at 579.900 kb on + strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.961 kb on - strand, within Rru_A0493at 579.961 kb on - strand, within Rru_A0493at 580.024 kb on - strand, within Rru_A0493at 580.202 kb on + strandat 580.227 kb on + strandat 580.227 kb on + strandat 580.227 kb on + strandat 580.298 kb on + strandat 580.329 kb on + strandat 580.330 kb on - strandat 580.330 kb on - strandat 580.360 kb on + strandat 580.361 kb on - strandat 580.361 kb on - strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.367 kb on - strandat 580.367 kb on - strandat 580.367 kb on - strandat 580.459 kb on + strand, within Rru_A0494at 580.553 kb on - strand, within Rru_A0494at 580.599 kb on + strand, within Rru_A0494at 580.599 kb on + strand, within Rru_A0494at 580.867 kb on + strand, within Rru_A0494at 580.867 kb on + strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.991 kb on - strand, within Rru_A0494at 580.991 kb on - strand, within Rru_A0494at 581.065 kb on + strand, within Rru_A0494at 581.200 kb on + strand, within Rru_A0494at 581.200 kb on + strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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577,824 + Rru_A0491 0.76 +0.1
577,824 + Rru_A0491 0.76 -1.0
577,825 - Rru_A0491 0.76 -0.9
577,825 - Rru_A0491 0.76 -0.9
577,912 + Rru_A0491 0.87 -3.3
577,912 + Rru_A0491 0.87 -0.0
577,989 + -1.4
577,989 + -1.6
577,990 - -1.9
578,047 - -2.7
578,080 + Rru_A0492 0.12 -1.5
578,095 - Rru_A0492 0.14 +0.1
578,284 + Rru_A0492 0.39 +0.1
578,284 + Rru_A0492 0.39 -1.3
578,284 + Rru_A0492 0.39 -1.6
578,285 - Rru_A0492 0.39 +0.1
578,285 - Rru_A0492 0.39 -1.6
578,285 - Rru_A0492 0.39 -2.9
578,764 - +0.4
578,764 - -0.9
578,777 + +1.7
578,778 - +0.1
578,796 + +0.1
579,111 - Rru_A0493 0.20 -1.4
579,239 + Rru_A0493 0.28 +0.1
579,239 + Rru_A0493 0.28 -1.6
579,239 + Rru_A0493 0.28 -1.3
579,239 + Rru_A0493 0.28 -0.9
579,239 + Rru_A0493 0.28 -0.9
579,239 + Rru_A0493 0.28 +0.1
579,239 + Rru_A0493 0.28 +0.1
579,239 + Rru_A0493 0.28 -2.9
579,240 - Rru_A0493 0.28 +0.1
579,240 - Rru_A0493 0.28 +0.1
579,240 - Rru_A0493 0.28 +0.1
579,240 - Rru_A0493 0.28 +0.1
579,240 - Rru_A0493 0.28 -2.4
579,240 - Rru_A0493 0.28 +0.1
579,240 - Rru_A0493 0.28 +0.1
579,243 + Rru_A0493 0.29 +0.1
579,243 + Rru_A0493 0.29 -0.9
579,243 + Rru_A0493 0.29 +0.1
579,244 - Rru_A0493 0.29 +0.1
579,244 - Rru_A0493 0.29 +0.1
579,244 - Rru_A0493 0.29 -0.9
579,244 - Rru_A0493 0.29 +0.1
579,244 - Rru_A0493 0.29 +0.1
579,244 - Rru_A0493 0.29 +0.1
579,244 - Rru_A0493 0.29 -0.6
579,244 - Rru_A0493 0.29 -0.9
579,244 - Rru_A0493 0.29 +0.1
579,244 - Rru_A0493 0.29 +0.1
579,244 - Rru_A0493 0.29 +0.1
579,245 + Rru_A0493 0.29 +0.1
579,450 + Rru_A0493 0.42 +0.1
579,451 - Rru_A0493 0.42 +0.1
579,512 + Rru_A0493 0.46 +0.1
579,512 + Rru_A0493 0.46 -1.4
579,512 + Rru_A0493 0.46 +0.1
579,512 + Rru_A0493 0.46 +0.5
579,512 + Rru_A0493 0.46 -1.9
579,512 + Rru_A0493 0.46 -2.1
579,513 - Rru_A0493 0.46 +0.1
579,513 - Rru_A0493 0.46 +0.1
579,513 - Rru_A0493 0.46 +0.1
579,513 - Rru_A0493 0.46 +0.1
579,568 - Rru_A0493 0.50 +0.1
579,568 - Rru_A0493 0.50 +0.1
579,569 + Rru_A0493 0.50 +0.6
579,753 + Rru_A0493 0.62 -0.6
579,798 + Rru_A0493 0.65 -2.4
579,799 - Rru_A0493 0.65 +0.1
579,900 + Rru_A0493 0.72 +0.1
579,901 - Rru_A0493 0.72 +0.1
579,901 - Rru_A0493 0.72 -2.4
579,901 - Rru_A0493 0.72 +0.1
579,901 - Rru_A0493 0.72 -0.9
579,901 - Rru_A0493 0.72 -2.1
579,901 - Rru_A0493 0.72 +0.1
579,901 - Rru_A0493 0.72 +0.1
579,960 + Rru_A0493 0.76 +0.4
579,960 + Rru_A0493 0.76 +0.1
579,960 + Rru_A0493 0.76 +0.1
579,960 + Rru_A0493 0.76 -3.6
579,960 + Rru_A0493 0.76 -1.4
579,961 - Rru_A0493 0.76 -0.9
579,961 - Rru_A0493 0.76 +0.1
580,024 - Rru_A0493 0.80 -2.4
580,202 + +0.1
580,227 + +0.1
580,227 + +0.1
580,227 + -1.9
580,298 + +0.1
580,329 + +0.1
580,330 - -0.9
580,330 - +0.1
580,360 + -1.4
580,361 - +0.1
580,361 - +0.1
580,366 + -1.9
580,366 + -1.2
580,366 + -0.9
580,366 + -0.9
580,366 + +0.1
580,366 + +0.1
580,367 - -0.9
580,367 - -1.1
580,367 - +0.1
580,459 + Rru_A0494 0.12 +0.1
580,553 - Rru_A0494 0.21 +0.1
580,599 + Rru_A0494 0.26 -1.4
580,599 + Rru_A0494 0.26 -2.1
580,867 + Rru_A0494 0.52 -1.4
580,867 + Rru_A0494 0.52 -3.0
580,868 - Rru_A0494 0.52 -1.9
580,868 - Rru_A0494 0.52 -0.9
580,868 - Rru_A0494 0.52 +0.1
580,990 + Rru_A0494 0.64 +0.1
580,990 + Rru_A0494 0.64 +0.1
580,990 + Rru_A0494 0.64 -2.4
580,991 - Rru_A0494 0.64 +0.1
580,991 - Rru_A0494 0.64 -0.3
581,065 + Rru_A0494 0.71 +0.1
581,200 + Rru_A0494 0.84 -3.9
581,200 + Rru_A0494 0.84 +0.1
581,201 - Rru_A0494 0.84 -0.9
581,201 - Rru_A0494 0.84 -2.7
581,201 - Rru_A0494 0.84 +0.1

Or see this region's nucleotide sequence