Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0449

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0448 and Rru_A0449 are separated by 216 nucleotidesRru_A0449 and Rru_A0450 are separated by 242 nucleotidesRru_A0450 and Rru_A0451 are separated by 96 nucleotides Rru_A0448: Rru_A0448 - Protein of unknown function DUF52 (NCBI), at 526,142 to 526,990 _A0448 Rru_A0449: Rru_A0449 - Radical SAM (NCBI), at 527,207 to 528,319 _A0449 Rru_A0450: Rru_A0450 - Uncharacterized protein predicted to be involved in DNA repair-like (NCBI), at 528,562 to 529,083 _A0450 Rru_A0451: Rru_A0451 - hypothetical protein (NCBI), at 529,180 to 529,524 _A0451 Position (kb) 527 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1at 526.216 kb on + strandat 526.389 kb on + strand, within Rru_A0448at 526.389 kb on + strand, within Rru_A0448at 526.389 kb on + strand, within Rru_A0448at 526.390 kb on - strand, within Rru_A0448at 526.390 kb on - strand, within Rru_A0448at 526.665 kb on + strand, within Rru_A0448at 526.665 kb on + strand, within Rru_A0448at 526.666 kb on - strand, within Rru_A0448at 526.666 kb on - strand, within Rru_A0448at 526.797 kb on + strand, within Rru_A0448at 526.914 kb on + strandat 527.020 kb on + strandat 527.099 kb on - strandat 527.099 kb on - strandat 527.123 kb on + strandat 527.123 kb on + strandat 527.124 kb on - strandat 527.124 kb on - strandat 527.124 kb on - strandat 527.175 kb on + strandat 527.198 kb on + strandat 527.198 kb on + strandat 527.198 kb on + strandat 527.328 kb on + strand, within Rru_A0449at 527.328 kb on + strand, within Rru_A0449at 527.329 kb on - strand, within Rru_A0449at 527.329 kb on - strand, within Rru_A0449at 527.329 kb on - strand, within Rru_A0449at 527.348 kb on - strand, within Rru_A0449at 527.360 kb on - strand, within Rru_A0449at 527.612 kb on + strand, within Rru_A0449at 527.612 kb on + strand, within Rru_A0449at 527.612 kb on + strand, within Rru_A0449at 527.612 kb on + strand, within Rru_A0449at 527.612 kb on + strand, within Rru_A0449at 527.613 kb on - strand, within Rru_A0449at 527.613 kb on - strand, within Rru_A0449at 527.614 kb on + strand, within Rru_A0449at 527.614 kb on + strand, within Rru_A0449at 527.614 kb on + strand, within Rru_A0449at 527.614 kb on + strand, within Rru_A0449at 527.614 kb on + strand, within Rru_A0449at 527.615 kb on - strand, within Rru_A0449at 527.615 kb on - strand, within Rru_A0449at 527.705 kb on + strand, within Rru_A0449at 527.706 kb on - strand, within Rru_A0449at 527.706 kb on - strand, within Rru_A0449at 527.707 kb on + strand, within Rru_A0449at 527.708 kb on - strand, within Rru_A0449at 528.083 kb on + strand, within Rru_A0449at 528.083 kb on + strand, within Rru_A0449at 528.083 kb on + strand, within Rru_A0449at 528.084 kb on - strand, within Rru_A0449at 528.182 kb on + strand, within Rru_A0449at 528.402 kb on + strandat 528.402 kb on + strandat 528.403 kb on - strandat 528.422 kb on + strandat 528.422 kb on + strandat 528.423 kb on - strandat 528.423 kb on - strandat 528.430 kb on - strandat 528.487 kb on + strandat 528.487 kb on + strandat 528.487 kb on + strandat 528.487 kb on + strandat 528.488 kb on - strandat 528.638 kb on + strand, within Rru_A0450at 528.638 kb on + strand, within Rru_A0450at 528.639 kb on - strand, within Rru_A0450at 528.639 kb on - strand, within Rru_A0450at 528.639 kb on - strand, within Rru_A0450at 528.639 kb on - strand, within Rru_A0450at 528.639 kb on - strand, within Rru_A0450at 528.639 kb on - strand, within Rru_A0450at 529.022 kb on + strand, within Rru_A0450at 529.023 kb on - strand, within Rru_A0450at 529.074 kb on - strandat 529.079 kb on - strandat 529.106 kb on + strandat 529.107 kb on - strandat 529.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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526,216 + -0.9
526,389 + Rru_A0448 0.29 -0.7
526,389 + Rru_A0448 0.29 -1.0
526,389 + Rru_A0448 0.29 -0.2
526,390 - Rru_A0448 0.29 +0.1
526,390 - Rru_A0448 0.29 +0.1
526,665 + Rru_A0448 0.62 -0.9
526,665 + Rru_A0448 0.62 -0.9
526,666 - Rru_A0448 0.62 -1.8
526,666 - Rru_A0448 0.62 +0.1
526,797 + Rru_A0448 0.77 +0.1
526,914 + +0.1
527,020 + +0.1
527,099 - -2.3
527,099 - -0.9
527,123 + -0.0
527,123 + -1.7
527,124 - -1.1
527,124 - +0.1
527,124 - +0.1
527,175 + +0.2
527,198 + -1.2
527,198 + -2.5
527,198 + -1.2
527,328 + Rru_A0449 0.11 -2.2
527,328 + Rru_A0449 0.11 -1.7
527,329 - Rru_A0449 0.11 -1.9
527,329 - Rru_A0449 0.11 +0.2
527,329 - Rru_A0449 0.11 +0.2
527,348 - Rru_A0449 0.13 -1.0
527,360 - Rru_A0449 0.14 -0.2
527,612 + Rru_A0449 0.36 -1.4
527,612 + Rru_A0449 0.36 -1.8
527,612 + Rru_A0449 0.36 -2.4
527,612 + Rru_A0449 0.36 -0.8
527,612 + Rru_A0449 0.36 +0.2
527,613 - Rru_A0449 0.36 -0.9
527,613 - Rru_A0449 0.36 +0.2
527,614 + Rru_A0449 0.37 -1.3
527,614 + Rru_A0449 0.37 -2.5
527,614 + Rru_A0449 0.37 +0.2
527,614 + Rru_A0449 0.37 -2.3
527,614 + Rru_A0449 0.37 -2.2
527,615 - Rru_A0449 0.37 -0.8
527,615 - Rru_A0449 0.37 +1.2
527,705 + Rru_A0449 0.45 -1.4
527,706 - Rru_A0449 0.45 -0.6
527,706 - Rru_A0449 0.45 +0.2
527,707 + Rru_A0449 0.45 -3.7
527,708 - Rru_A0449 0.45 -1.0
528,083 + Rru_A0449 0.79 +0.2
528,083 + Rru_A0449 0.79 -2.0
528,083 + Rru_A0449 0.79 -0.8
528,084 - Rru_A0449 0.79 -2.0
528,182 + Rru_A0449 0.88 -0.9
528,402 + -1.4
528,402 + -1.7
528,403 - -1.8
528,422 + +0.2
528,422 + -1.4
528,423 - +0.7
528,423 - -2.8
528,430 - -1.3
528,487 + -0.8
528,487 + -1.8
528,487 + +0.2
528,487 + -2.1
528,488 - -1.8
528,638 + Rru_A0450 0.15 -1.4
528,638 + Rru_A0450 0.15 +0.2
528,639 - Rru_A0450 0.15 -2.8
528,639 - Rru_A0450 0.15 -1.4
528,639 - Rru_A0450 0.15 -1.8
528,639 - Rru_A0450 0.15 +0.2
528,639 - Rru_A0450 0.15 +0.2
528,639 - Rru_A0450 0.15 +0.2
529,022 + Rru_A0450 0.88 +0.2
529,023 - Rru_A0450 0.88 -2.3
529,074 - -2.4
529,079 - +0.2
529,106 + +1.2
529,107 - +0.2
529,107 - -1.5

Or see this region's nucleotide sequence