Experiment: Succinic Acid; Light intensity 150 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0388 and Rru_A0389 overlap by 59 nucleotides Rru_A0389 and Rru_A0390 are separated by 188 nucleotides Rru_A0390 and Rru_AR0015 are separated by 115 nucleotides Rru_AR0015 and Rru_A0391 are separated by 83 nucleotides Rru_A0391 and Rru_A0392 are separated by 27 nucleotides
Rru_A0388: Rru_A0388 - Protein of unknown function DUF6, transmembrane (NCBI), at 465,562 to 466,524
_A0388
Rru_A0389: Rru_A0389 - Antibiotic biosynthesis monooxygenase (NCBI), at 466,466 to 466,756
_A0389
Rru_A0390: Rru_A0390 - hypothetical protein (NCBI), at 466,945 to 467,925
_A0390
Rru_AR0015: Rru_AR0015 - tRNA-Leu (NCBI), at 468,041 to 468,126
_AR0015
Rru_A0391: Rru_A0391 - hypothetical protein (NCBI), at 468,210 to 468,458
_A0391
Rru_A0392: Rru_A0392 - Molybdopterin binding domain (NCBI), at 468,486 to 469,253
_A0392
Position (kb) 466
467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 466.064 kb on - strand, within Rru_A0388 at 466.064 kb on - strand, within Rru_A0388 at 466.064 kb on - strand, within Rru_A0388 at 466.267 kb on + strand, within Rru_A0388 at 466.267 kb on + strand, within Rru_A0388 at 466.268 kb on - strand, within Rru_A0388 at 466.268 kb on - strand, within Rru_A0388 at 466.268 kb on - strand, within Rru_A0388 at 466.318 kb on + strand, within Rru_A0388 at 466.319 kb on - strand, within Rru_A0388 at 466.645 kb on - strand, within Rru_A0389 at 466.645 kb on - strand, within Rru_A0389 at 466.645 kb on - strand, within Rru_A0389 at 466.715 kb on - strand, within Rru_A0389 at 466.715 kb on - strand, within Rru_A0389 at 466.750 kb on + strand at 466.750 kb on + strand at 466.750 kb on + strand at 466.864 kb on + strand at 466.864 kb on + strand at 466.865 kb on - strand at 466.865 kb on - strand at 466.984 kb on + strand at 466.984 kb on + strand at 466.984 kb on + strand at 466.985 kb on - strand at 466.985 kb on - strand at 466.985 kb on - strand at 466.985 kb on - strand at 467.017 kb on + strand at 467.017 kb on + strand at 467.018 kb on - strand at 467.018 kb on - strand at 467.029 kb on + strand at 467.029 kb on + strand at 467.029 kb on + strand at 467.030 kb on - strand at 467.030 kb on - strand at 467.049 kb on + strand, within Rru_A0390 at 467.143 kb on + strand, within Rru_A0390 at 467.143 kb on + strand, within Rru_A0390 at 467.143 kb on + strand, within Rru_A0390 at 467.143 kb on + strand, within Rru_A0390 at 467.144 kb on - strand, within Rru_A0390 at 467.144 kb on - strand, within Rru_A0390 at 467.158 kb on + strand, within Rru_A0390 at 467.159 kb on - strand, within Rru_A0390 at 467.200 kb on - strand, within Rru_A0390 at 467.200 kb on - strand, within Rru_A0390 at 467.200 kb on - strand, within Rru_A0390 at 467.200 kb on - strand, within Rru_A0390 at 467.200 kb on - strand, within Rru_A0390 at 467.200 kb on - strand, within Rru_A0390 at 467.200 kb on - strand, within Rru_A0390 at 467.331 kb on + strand, within Rru_A0390 at 467.331 kb on + strand, within Rru_A0390 at 467.335 kb on + strand, within Rru_A0390 at 467.335 kb on + strand, within Rru_A0390 at 467.407 kb on + strand, within Rru_A0390 at 467.407 kb on + strand, within Rru_A0390 at 467.407 kb on + strand, within Rru_A0390 at 467.407 kb on + strand, within Rru_A0390 at 467.407 kb on + strand, within Rru_A0390 at 467.407 kb on + strand, within Rru_A0390 at 467.407 kb on + strand, within Rru_A0390 at 467.407 kb on + strand, within Rru_A0390 at 467.407 kb on + strand, within Rru_A0390 at 467.408 kb on - strand, within Rru_A0390 at 467.408 kb on - strand, within Rru_A0390 at 467.408 kb on - strand, within Rru_A0390 at 467.449 kb on - strand, within Rru_A0390 at 467.776 kb on + strand, within Rru_A0390 at 467.776 kb on + strand, within Rru_A0390 at 467.777 kb on - strand, within Rru_A0390 at 467.871 kb on + strand at 467.872 kb on - strand at 467.988 kb on - strand at 468.168 kb on - strand at 468.168 kb on - strand at 468.301 kb on + strand, within Rru_A0391 at 468.302 kb on - strand, within Rru_A0391 at 468.302 kb on - strand, within Rru_A0391 at 468.302 kb on - strand, within Rru_A0391 at 468.628 kb on + strand, within Rru_A0392 at 468.628 kb on + strand, within Rru_A0392 at 468.628 kb on + strand, within Rru_A0392 at 468.629 kb on - strand, within Rru_A0392 at 468.629 kb on - strand, within Rru_A0392 at 468.629 kb on - strand, within Rru_A0392 at 468.629 kb on - strand, within Rru_A0392 at 468.629 kb on - strand, within Rru_A0392 at 468.925 kb on + strand, within Rru_A0392 at 468.925 kb on + strand, within Rru_A0392
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM remove 466,064 - Rru_A0388 0.52 +0.2 466,064 - Rru_A0388 0.52 -3.6 466,064 - Rru_A0388 0.52 -0.8 466,267 + Rru_A0388 0.73 +0.2 466,267 + Rru_A0388 0.73 -0.8 466,268 - Rru_A0388 0.73 -2.5 466,268 - Rru_A0388 0.73 +0.2 466,268 - Rru_A0388 0.73 -0.1 466,318 + Rru_A0388 0.79 -2.4 466,319 - Rru_A0388 0.79 -1.4 466,645 - Rru_A0389 0.62 +0.2 466,645 - Rru_A0389 0.62 +0.7 466,645 - Rru_A0389 0.62 -1.7 466,715 - Rru_A0389 0.86 -0.3 466,715 - Rru_A0389 0.86 -1.7 466,750 + -1.4 466,750 + +0.2 466,750 + -0.3 466,864 + -1.8 466,864 + -1.4 466,865 - -0.9 466,865 - +0.7 466,984 + -2.7 466,984 + +0.2 466,984 + +0.2 466,985 - +0.2 466,985 - -0.8 466,985 - +0.2 466,985 - -1.7 467,017 + -1.4 467,017 + +0.2 467,018 - +0.2 467,018 - -2.1 467,029 + -2.8 467,029 + -2.0 467,029 + -0.8 467,030 - -3.3 467,030 - -1.7 467,049 + Rru_A0390 0.11 -1.8 467,143 + Rru_A0390 0.20 +0.7 467,143 + Rru_A0390 0.20 -1.4 467,143 + Rru_A0390 0.20 -1.2 467,143 + Rru_A0390 0.20 -2.2 467,144 - Rru_A0390 0.20 +0.2 467,144 - Rru_A0390 0.20 -2.4 467,158 + Rru_A0390 0.22 -1.0 467,159 - Rru_A0390 0.22 +0.2 467,200 - Rru_A0390 0.26 -1.2 467,200 - Rru_A0390 0.26 -2.3 467,200 - Rru_A0390 0.26 -2.1 467,200 - Rru_A0390 0.26 -1.2 467,200 - Rru_A0390 0.26 -2.7 467,200 - Rru_A0390 0.26 -1.6 467,200 - Rru_A0390 0.26 -1.5 467,331 + Rru_A0390 0.39 -1.4 467,331 + Rru_A0390 0.39 +0.2 467,335 + Rru_A0390 0.40 -2.2 467,335 + Rru_A0390 0.40 -1.4 467,407 + Rru_A0390 0.47 +0.2 467,407 + Rru_A0390 0.47 +0.2 467,407 + Rru_A0390 0.47 -0.7 467,407 + Rru_A0390 0.47 +0.2 467,407 + Rru_A0390 0.47 -1.8 467,407 + Rru_A0390 0.47 -2.4 467,407 + Rru_A0390 0.47 -2.7 467,407 + Rru_A0390 0.47 -3.3 467,407 + Rru_A0390 0.47 +0.2 467,408 - Rru_A0390 0.47 -1.9 467,408 - Rru_A0390 0.47 +0.2 467,408 - Rru_A0390 0.47 -1.1 467,449 - Rru_A0390 0.51 -1.9 467,776 + Rru_A0390 0.85 +0.2 467,776 + Rru_A0390 0.85 -1.8 467,777 - Rru_A0390 0.85 +0.2 467,871 + +0.2 467,872 - +0.2 467,988 - +0.2 468,168 - +0.2 468,168 - -1.5 468,301 + Rru_A0391 0.37 -1.8 468,302 - Rru_A0391 0.37 -1.7 468,302 - Rru_A0391 0.37 -0.8 468,302 - Rru_A0391 0.37 -2.2 468,628 + Rru_A0392 0.18 +0.2 468,628 + Rru_A0392 0.18 -1.4 468,628 + Rru_A0392 0.18 -1.8 468,629 - Rru_A0392 0.19 -0.4 468,629 - Rru_A0392 0.19 -0.3 468,629 - Rru_A0392 0.19 -1.4 468,629 - Rru_A0392 0.19 +0.2 468,629 - Rru_A0392 0.19 -1.0 468,925 + Rru_A0392 0.57 -2.3 468,925 + Rru_A0392 0.57 +0.2
Or see this region's nucleotide sequence