Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0376

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0374 and Rru_A0375 are separated by 114 nucleotidesRru_A0375 and Rru_A0376 are separated by 27 nucleotidesRru_A0376 and Rru_A0377 overlap by 4 nucleotides Rru_A0374: Rru_A0374 - hypothetical protein (NCBI), at 450,804 to 451,733 _A0374 Rru_A0375: Rru_A0375 - Pirin-like (NCBI), at 451,848 to 452,543 _A0375 Rru_A0376: Rru_A0376 - Transcriptional Regulator, LytR/AlgR family (NCBI), at 452,571 to 453,287 _A0376 Rru_A0377: Rru_A0377 - Signal Transduction Histidine Kinase (STHK), LytS (NCBI), at 453,284 to 455,014 _A0377 Position (kb) 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 451.576 kb on - strand, within Rru_A0374at 451.576 kb on - strand, within Rru_A0374at 451.591 kb on - strand, within Rru_A0374at 451.645 kb on - strandat 451.645 kb on - strandat 451.645 kb on - strandat 451.648 kb on - strandat 451.666 kb on + strandat 451.667 kb on - strandat 451.832 kb on + strandat 451.835 kb on - strandat 451.935 kb on + strand, within Rru_A0375at 451.935 kb on + strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 451.936 kb on - strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.046 kb on + strand, within Rru_A0375at 452.047 kb on - strand, within Rru_A0375at 452.047 kb on - strand, within Rru_A0375at 452.157 kb on + strand, within Rru_A0375at 452.158 kb on - strand, within Rru_A0375at 452.158 kb on - strand, within Rru_A0375at 452.177 kb on + strand, within Rru_A0375at 452.178 kb on - strand, within Rru_A0375at 452.178 kb on - strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.403 kb on + strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.404 kb on - strand, within Rru_A0375at 452.405 kb on + strand, within Rru_A0375at 452.406 kb on - strand, within Rru_A0375at 452.541 kb on + strandat 452.710 kb on + strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.711 kb on - strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.803 kb on + strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.804 kb on - strand, within Rru_A0376at 452.998 kb on + strand, within Rru_A0376at 452.999 kb on - strand, within Rru_A0376at 452.999 kb on - strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.034 kb on + strand, within Rru_A0376at 453.035 kb on - strand, within Rru_A0376at 453.035 kb on - strand, within Rru_A0376at 453.043 kb on + strand, within Rru_A0376at 453.129 kb on - strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.132 kb on + strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.133 kb on - strand, within Rru_A0376at 453.399 kb on + strandat 453.399 kb on + strandat 453.400 kb on - strandat 453.478 kb on - strand, within Rru_A0377at 453.478 kb on - strand, within Rru_A0377at 453.702 kb on + strand, within Rru_A0377at 453.702 kb on + strand, within Rru_A0377at 453.703 kb on - strand, within Rru_A0377at 454.024 kb on - strand, within Rru_A0377at 454.024 kb on - strand, within Rru_A0377at 454.024 kb on - strand, within Rru_A0377at 454.119 kb on + strand, within Rru_A0377at 454.143 kb on + strand, within Rru_A0377at 454.143 kb on + strand, within Rru_A0377at 454.143 kb on + strand, within Rru_A0377at 454.144 kb on - strand, within Rru_A0377at 454.144 kb on - strand, within Rru_A0377at 454.189 kb on + strand, within Rru_A0377at 454.207 kb on + strand, within Rru_A0377at 454.208 kb on - strand, within Rru_A0377at 454.208 kb on - strand, within Rru_A0377at 454.208 kb on - strand, within Rru_A0377

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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451,576 - Rru_A0374 0.83 +0.2
451,576 - Rru_A0374 0.83 -1.7
451,591 - Rru_A0374 0.85 +0.2
451,645 - +0.2
451,645 - -1.4
451,645 - -0.8
451,648 - +0.2
451,666 + +0.2
451,667 - +0.2
451,832 + -0.8
451,835 - +0.2
451,935 + Rru_A0375 0.12 -3.1
451,935 + Rru_A0375 0.12 -0.8
451,936 - Rru_A0375 0.13 +0.2
451,936 - Rru_A0375 0.13 -2.6
451,936 - Rru_A0375 0.13 -0.8
451,936 - Rru_A0375 0.13 +0.2
451,936 - Rru_A0375 0.13 -0.8
452,046 + Rru_A0375 0.28 -0.7
452,046 + Rru_A0375 0.28 -1.8
452,046 + Rru_A0375 0.28 -2.1
452,046 + Rru_A0375 0.28 +0.2
452,046 + Rru_A0375 0.28 -2.6
452,046 + Rru_A0375 0.28 +0.2
452,047 - Rru_A0375 0.29 -1.1
452,047 - Rru_A0375 0.29 -1.8
452,157 + Rru_A0375 0.44 -1.3
452,158 - Rru_A0375 0.45 +0.2
452,158 - Rru_A0375 0.45 -2.6
452,177 + Rru_A0375 0.47 +0.2
452,178 - Rru_A0375 0.47 +0.2
452,178 - Rru_A0375 0.47 +1.2
452,403 + Rru_A0375 0.80 -2.3
452,403 + Rru_A0375 0.80 -1.6
452,403 + Rru_A0375 0.80 +0.2
452,403 + Rru_A0375 0.80 +0.2
452,403 + Rru_A0375 0.80 -1.4
452,404 - Rru_A0375 0.80 -0.7
452,404 - Rru_A0375 0.80 +0.2
452,404 - Rru_A0375 0.80 +0.2
452,404 - Rru_A0375 0.80 -2.0
452,405 + Rru_A0375 0.80 +0.2
452,406 - Rru_A0375 0.80 +0.2
452,541 + +0.2
452,710 + Rru_A0376 0.19 -2.4
452,711 - Rru_A0376 0.20 -3.0
452,711 - Rru_A0376 0.20 -1.8
452,711 - Rru_A0376 0.20 -2.1
452,711 - Rru_A0376 0.20 -1.0
452,803 + Rru_A0376 0.32 -3.2
452,803 + Rru_A0376 0.32 -3.5
452,803 + Rru_A0376 0.32 +0.2
452,803 + Rru_A0376 0.32 +0.2
452,803 + Rru_A0376 0.32 -2.1
452,804 - Rru_A0376 0.32 -0.8
452,804 - Rru_A0376 0.32 +0.2
452,804 - Rru_A0376 0.32 -0.8
452,804 - Rru_A0376 0.32 -1.5
452,804 - Rru_A0376 0.32 +0.2
452,804 - Rru_A0376 0.32 -1.8
452,804 - Rru_A0376 0.32 -3.4
452,998 + Rru_A0376 0.60 +0.2
452,999 - Rru_A0376 0.60 -1.5
452,999 - Rru_A0376 0.60 +0.2
453,034 + Rru_A0376 0.65 +0.2
453,034 + Rru_A0376 0.65 -1.5
453,034 + Rru_A0376 0.65 -1.7
453,034 + Rru_A0376 0.65 +0.2
453,035 - Rru_A0376 0.65 -2.1
453,035 - Rru_A0376 0.65 -3.4
453,043 + Rru_A0376 0.66 -1.3
453,129 - Rru_A0376 0.78 -0.8
453,132 + Rru_A0376 0.78 +0.2
453,132 + Rru_A0376 0.78 -0.8
453,132 + Rru_A0376 0.78 -1.6
453,132 + Rru_A0376 0.78 -0.8
453,132 + Rru_A0376 0.78 +0.2
453,133 - Rru_A0376 0.78 -2.1
453,133 - Rru_A0376 0.78 +0.5
453,133 - Rru_A0376 0.78 -0.2
453,133 - Rru_A0376 0.78 -1.3
453,399 + -1.1
453,399 + -1.7
453,400 - -1.6
453,478 - Rru_A0377 0.11 +0.2
453,478 - Rru_A0377 0.11 -1.6
453,702 + Rru_A0377 0.24 +0.2
453,702 + Rru_A0377 0.24 -1.9
453,703 - Rru_A0377 0.24 -0.6
454,024 - Rru_A0377 0.43 +0.2
454,024 - Rru_A0377 0.43 +0.2
454,024 - Rru_A0377 0.43 -2.4
454,119 + Rru_A0377 0.48 -1.4
454,143 + Rru_A0377 0.50 -1.9
454,143 + Rru_A0377 0.50 -2.6
454,143 + Rru_A0377 0.50 -0.8
454,144 - Rru_A0377 0.50 +2.2
454,144 - Rru_A0377 0.50 -1.6
454,189 + Rru_A0377 0.52 -1.8
454,207 + Rru_A0377 0.53 +0.2
454,208 - Rru_A0377 0.53 +0.2
454,208 - Rru_A0377 0.53 -1.0
454,208 - Rru_A0377 0.53 +0.2

Or see this region's nucleotide sequence